Variant report

Variant	rs10743939
Chromosome Location	chr12:7638020-7638021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10772428	0.92[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.94[ASN][1000 genomes]
rs10845306	0.84[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.95[ASN][1000 genomes]
rs11054180	0.87[ASN][1000 genomes]
rs11054214	0.93[ASN][1000 genomes]
rs11836971	0.96[ASN][1000 genomes]
rs12809680	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12810262	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3210140	0.96[ASN][1000 genomes]
rs4883264	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7307454	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7965049	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10743939	KLRC3	cis	cerebellum	SCAN
rs10743939	CLEC4E	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7630000-7649400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr12:7630200-7649200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:7632000-7638600	Weak transcription	Spleen	Spleen
4	chr12:7636200-7639000	Weak transcription	Pancreas	Pancrea
5	chr12:7636200-7639800	Weak transcription	Placenta	Placenta
6	chr12:7638000-7639000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr12:7638000-7645800	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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