Variant report

Variant	rs7307454
Chromosome Location	chr12:7647099-7647100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10743939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10772428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10845306	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11054180	0.87[ASN][1000 genomes]
rs11054214	0.96[ASN][1000 genomes]
rs11836971	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809680	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12810262	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3210140	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883264	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965049	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7630000-7649400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr12:7630200-7649200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:7639600-7649400	Weak transcription	Adipose Nuclei	Adipose
4	chr12:7640600-7647800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:7645400-7649200	Weak transcription	NHEK	skin
6	chr12:7645600-7647600	Active TSS	Liver	Liver
7	chr12:7645800-7647600	Weak transcription	Right Atrium	heart
8	chr12:7646000-7649400	Weak transcription	Lung	lung
9	chr12:7646800-7647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:7647000-7649400	Weak transcription	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links