Variant report

Variant	rs10845306
Chromosome Location	chr12:7657427-7657428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:7657396-7657446	HepG2	liver:	n/a
2	chr12:7657396-7657446	HAEpiC	amniotic membrane:	n/a
3	chr12:7657396-7657446	SK-N-SH	brain:	n/a
4	chr12:7657396-7657446	HMEC	breast:	n/a
5	chr12:7657396-7657446	LNCaP	prostate:	n/a
6	chr12:7657396-7657446	HCPEpiC	choroid plexus:	n/a
7	chr12:7657396-7657446	PFSK-1	brain:	n/a
8	chr12:7657396-7657446	T-47D	breast:	n/a
9	chr12:7657396-7657446	GM12891	blood:	n/a
10	chr12:7657396-7657446	PANC-1	pancreas:	n/a
11	chr12:7657396-7657446	AG09319	gingival:	n/a
12	chr12:7657396-7657446	RPTEC	kidney:	n/a
13	chr12:7657396-7657446	Caco-2	colon:	n/a
14	chr12:7657396-7657446	CMK	blood:	n/a
15	chr12:7657396-7657446	HEK293	kidney:	embryo
16	chr12:7657396-7657446	HL-60	blood:	n/a
17	chr12:7657396-7657446	PrEC	prostate:	n/a
18	chr12:7657396-7657446	SK-N-SH_RA	brain:	n/a
19	chr12:7657396-7657446	AoSMC	blood vessel:	n/a
20	chr12:7657396-7657446	BE2_C	brain:	n/a
21	chr12:7657396-7657446	GM19239	blood:	n/a
22	chr12:7657396-7657446	ovcar-3	ovarian:	n/a
23	chr12:7657396-7657446	HEEpiC	esophagus:	n/a
24	chr12:7657396-7657446	H1-hESC	embryonic stem cell:	embryo
25	chr12:7657396-7657446	Hela-S3	cervix:	n/a
26	chr12:7657396-7657446	Jurkat	blood:	n/a
27	chr12:7657396-7657446	NB4	blood:	n/a
28	chr12:7657396-7657446	HRCEpiC	kidney:	n/a
29	chr12:7657396-7657446	HNPCEpiC	eye:	n/a
30	chr12:7657396-7657446	SK-N-MC	brain:	n/a
31	chr12:7657396-7657446	NT2-D1	testis:	n/a
32	chr12:7657396-7657446	HCT-116	colon:	n/a
33	chr12:7657396-7657446	NH-A	brain:	n/a
34	chr12:7657396-7657446	HUVEC	blood vessel:	n/a
35	chr12:7657396-7657446	AG09309	skin:	n/a
36	chr12:7657396-7657446	A549	lung:	n/a
37	chr12:7657396-7657446	HIPEpiC	eye:	n/a
38	chr12:7657396-7657446	U87	brain:	n/a
39	chr12:7657396-7657446	MCF-7	breast:	n/a
40	chr12:7657396-7657446	BJ	skin:	n/a
41	chr12:7657396-7657446	AG10803	skin:	n/a
42	chr12:7657396-7657446	AG04449	skin:	fetal
43	chr12:7657396-7657446	MCF10A-Er-Src	breast:	n/a
44	chr12:7657396-7657446	IMR90	lung:	fetal
45	chr12:7657396-7657446	SAEC	small airway:	n/a
46	chr12:7657396-7657446	K562	blood:	n/a
47	chr12:7657396-7657446	ECC-1	luminal epithelium:	n/a
48	chr12:7657396-7657446	NHDF-neo	bronchial:	n/a
49	chr12:7657396-7657446	HRE	kidney:	n/a
50	chr12:7657396-7657446	GM12878	blood:	n/a

No data

Variant related genes	Relation type
CD163	CpG island

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10743939	0.84[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.95[ASN][1000 genomes]
rs10772428	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11054180	0.85[ASN][1000 genomes]
rs11054214	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11054230	0.82[EUR][1000 genomes]
rs11054259	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11609115	0.80[EUR][1000 genomes]
rs11836971	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12809680	0.94[ASN][1000 genomes]
rs12810262	0.95[ASN][1000 genomes]
rs3210140	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4883264	0.98[ASN][1000 genomes]
rs60773564	0.82[EUR][1000 genomes]
rs7307454	0.98[ASN][1000 genomes]
rs7965049	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1041155	chr12:7655137-7821891	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1045650	chr12:7655137-7824995	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3405329	chr12:7656734-7712687	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10845306	CLEC4E	cis	parietal	SCAN
rs10845306	CD69	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7656200-7658000	Weak transcription	Liver	Liver
2	chr12:7656400-7657600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:7657400-7663400	Weak transcription	Monocytes-CD14+_RO01746	blood

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