Variant report

Variant	rs12810262
Chromosome Location	chr12:7637008-7637009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10743939	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10772428	0.94[ASN][1000 genomes]
rs10845306	0.95[ASN][1000 genomes]
rs11054180	0.82[ASN][1000 genomes]
rs11054214	0.93[ASN][1000 genomes]
rs11836971	0.96[ASN][1000 genomes]
rs12809680	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3210140	0.96[ASN][1000 genomes]
rs4883264	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7307454	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7965049	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7622200-7637600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:7630000-7649400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:7630200-7649200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr12:7632000-7638600	Weak transcription	Spleen	Spleen
5	chr12:7636200-7637800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:7636200-7639000	Weak transcription	Pancreas	Pancrea
7	chr12:7636200-7639800	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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