Variant report

Variant	rs10745290
Chromosome Location	chr10:50192312-50192313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:50191915-50192673	GM12892	blood:	n/a	n/a
2	POLR2A	chr10:50191829-50193658	GM12892	blood:	n/a	n/a
3	POLR2A	chr10:50191585-50194118	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:50191817-50192363	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50183047..50186583-chr10:50187607..50192448,6	K562	blood:

Variant related genes	Relation type
ENSG00000226576	TF binding region
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1015717	0.93[CEU][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes]
rs10735228	0.93[CEU][hapmap];0.94[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10776658	0.85[CEU][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes]
rs10776659	0.89[CEU][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs10776660	0.85[CEU][hapmap]
rs10857430	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10857431	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10857661	0.85[CEU][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes]
rs10857662	0.96[CEU][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs11101572	0.92[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs11101573	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12413832	0.86[CEU][hapmap];0.93[JPT][hapmap]
rs1877799	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1877800	0.93[CEU][hapmap];0.94[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1913516	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1913526	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2137909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2137913	0.89[EUR][1000 genomes]
rs2245392	0.84[EUR][1000 genomes]
rs2249429	0.82[CEU][hapmap];0.88[CHB][hapmap];0.81[EUR][1000 genomes]
rs2249657	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2249659	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2249662	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2252811	0.82[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2271565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2292584	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2292585	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[EUR][1000 genomes]
rs2457466	0.92[JPT][hapmap]
rs2458671	0.81[EUR][1000 genomes]
rs2663028	0.86[CEU][hapmap]
rs2663067	0.82[CEU][hapmap]
rs2671715	0.93[JPT][hapmap]
rs2889709	0.84[CEU][hapmap]
rs3750867	0.89[EUR][1000 genomes]
rs3829206	0.92[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs4317902	0.89[EUR][1000 genomes]
rs4614357	0.85[CEU][hapmap];0.92[JPT][hapmap]
rs4838433	0.81[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4838663	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61848117	0.88[EUR][1000 genomes]
rs6537586	0.85[CEU][hapmap]
rs6537587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7072344	0.81[CEU][hapmap]
rs7082322	0.92[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs7083751	0.86[CEU][hapmap]
rs7086917	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7091429	0.85[CEU][hapmap]
rs7093656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7098224	0.92[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs7913932	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
2	chr10:50145000-50193200	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:50145400-50193200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:50145800-50193400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:50148000-50193600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50153600-50193600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:50185400-50192400	Strong transcription	Primary hematopoietic stem cells	blood
8	chr10:50189200-50193800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:50189600-50193200	Weak transcription	Esophagus	oesophagus
10	chr10:50189800-50192600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:50189800-50195200	Weak transcription	Fetal Lung	lung
12	chr10:50189800-50201200	Weak transcription	Right Atrium	heart
13	chr10:50190000-50193600	Strong transcription	Spleen	Spleen
14	chr10:50190400-50204600	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:50191400-50193000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:50191400-50193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:50191800-50192800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:50192000-50192400	Enhancers	Fetal Kidney	kidney
19	chr10:50192000-50192600	Enhancers	Ovary	ovary

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