Variant report

Variant	rs2458671
Chromosome Location	chr10:50197994-50197995
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50192722..50194230-chr10:50195951..50198323,2	K562	blood:
2	chr10:50193213..50195144-chr10:50197588..50199974,2	K562	blood:

Variant related genes	Relation type
ENSG00000264800	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10735228	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10745290	0.81[EUR][1000 genomes]
rs10776660	0.82[EUR][1000 genomes]
rs10857430	0.81[EUR][1000 genomes]
rs12413832	0.81[EUR][1000 genomes]
rs1877799	0.88[ASN][1000 genomes]
rs1877800	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1913516	0.81[EUR][1000 genomes]
rs1913528	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2090126	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2090127	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2245379	0.87[ASN][1000 genomes]
rs2245392	0.92[ASN][1000 genomes]
rs2249429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249657	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2249659	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2249662	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2252811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2264553	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2264843	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2292585	0.86[ASN][1000 genomes]
rs2458675	0.81[ASN][1000 genomes]
rs2663028	0.81[EUR][1000 genomes]
rs2889709	0.80[EUR][1000 genomes]
rs4614357	0.82[EUR][1000 genomes]
rs4838433	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4838663	0.88[ASN][1000 genomes]
rs6537586	0.82[EUR][1000 genomes]
rs6537587	0.81[EUR][1000 genomes]
rs7072344	0.82[EUR][1000 genomes]
rs7083751	0.82[EUR][1000 genomes]
rs7086917	0.81[EUR][1000 genomes]
rs7091429	0.82[EUR][1000 genomes]
rs7093656	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	esv3502799	chr10:50196746-50208344	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3502797	chr10:50197246-50208144	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3502798	chr10:50197531-50207624	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3314886	chr10:50197812-50207300	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3314897	chr10:50197842-50207294	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3502795	chr10:50197861-50207300	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3502801	chr10:50197869-50207271	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3502800	chr10:50197875-50207222	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3502802	chr10:50197909-50207239	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3326907	chr10:50197910-50204831	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv3314908	chr10:50197969-50207188	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3502803	chr10:50197969-50207188	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50189800-50201200	Weak transcription	Right Atrium	heart
2	chr10:50190400-50204600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:50196200-50198800	Weak transcription	Primary B cells from cord blood	blood
4	chr10:50197600-50198400	Enhancers	Brain Hippocampus Middle	brain
5	chr10:50197600-50198400	Enhancers	Brain Substantia Nigra	brain
6	chr10:50197800-50198400	Enhancers	Brain Cingulate Gyrus	brain

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