Variant report

Variant	rs2245392
Chromosome Location	chr10:50208355-50208356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10735228	0.81[ASN][1000 genomes]
rs10745290	0.84[EUR][1000 genomes]
rs10857430	0.84[EUR][1000 genomes]
rs10857431	0.90[EUR][1000 genomes]
rs1877799	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1877800	0.81[ASN][1000 genomes]
rs1913516	0.84[EUR][1000 genomes]
rs1913526	0.91[EUR][1000 genomes]
rs1913528	0.98[ASN][1000 genomes]
rs2090126	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2090127	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2137909	0.81[EUR][1000 genomes]
rs2245379	0.95[ASN][1000 genomes]
rs2249429	0.92[ASN][1000 genomes]
rs2249662	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2252811	0.85[ASN][1000 genomes]
rs2264553	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2264843	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2271565	0.81[EUR][1000 genomes]
rs2292584	0.82[EUR][1000 genomes]
rs2292585	0.81[EUR][1000 genomes]
rs2458671	0.92[ASN][1000 genomes]
rs2458675	0.86[ASN][1000 genomes]
rs4838433	0.85[ASN][1000 genomes]
rs4838663	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6537587	0.84[EUR][1000 genomes]
rs7086917	0.84[EUR][1000 genomes]
rs7093656	0.84[EUR][1000 genomes]
rs7913932	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50206200-50210400	Enhancers	Duodenum Mucosa	Duodenum
2	chr10:50206200-50211200	Enhancers	Fetal Intestine Small	intestine
3	chr10:50206600-50211000	Enhancers	Fetal Intestine Large	intestine
4	chr10:50206800-50209800	Enhancers	Stomach Mucosa	stomach
5	chr10:50208200-50208600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:50208200-50209600	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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