Variant report

Variant	rs1913516
Chromosome Location	chr10:50196847-50196848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50192722..50194230-chr10:50195951..50198323,2	K562	blood:

Variant related genes	Relation type
ENSG00000264800	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1015717	0.92[CEU][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes]
rs10735228	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs10745290	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10776658	0.84[CEU][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes]
rs10776659	0.88[CEU][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs10776660	0.88[CEU][hapmap]
rs10857430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857431	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10857661	0.84[CEU][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes]
rs10857662	0.96[CEU][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs11101572	0.92[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs11101573	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12413832	0.88[CEU][hapmap];0.93[JPT][hapmap]
rs1877799	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1877800	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs1913526	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2137909	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2137913	0.89[EUR][1000 genomes]
rs2245392	0.84[EUR][1000 genomes]
rs2249429	0.84[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes]
rs2249657	0.81[CEU][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2249659	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2249662	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2252811	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs2271565	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2292584	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2292585	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2457466	0.80[CEU][hapmap];0.92[JPT][hapmap]
rs2458671	0.81[EUR][1000 genomes]
rs2663028	0.88[CEU][hapmap]
rs2663067	0.84[CEU][hapmap]
rs2671715	0.80[CEU][hapmap];0.93[JPT][hapmap]
rs2889709	0.87[CEU][hapmap]
rs3750867	0.89[EUR][1000 genomes]
rs3829206	0.92[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs4317902	0.89[EUR][1000 genomes]
rs4614357	0.87[CEU][hapmap];0.92[JPT][hapmap]
rs4838433	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs4838663	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848117	0.88[EUR][1000 genomes]
rs6537586	0.88[CEU][hapmap]
rs6537587	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7072344	0.83[CEU][hapmap]
rs7082322	0.92[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs7083751	0.88[CEU][hapmap]
rs7086917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091429	0.88[CEU][hapmap]
rs7093656	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7098224	0.92[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs7913932	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	esv3502799	chr10:50196746-50208344	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50189800-50201200	Weak transcription	Right Atrium	heart
2	chr10:50190400-50204600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:50192400-50197600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:50196200-50198800	Weak transcription	Primary B cells from cord blood	blood
5	chr10:50196800-50197000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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