Variant report

Variant	rs10749762
Chromosome Location	chr1:67028999-67029000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10749761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889628	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12122384	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1338190	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1856319	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3795530	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1210	chr1:67017295-67033203	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:67010000-67029000	Weak transcription	Fetal Kidney	kidney
3	chr1:67011800-67029800	Weak transcription	Fetal Brain Male	brain
4	chr1:67025000-67031600	Enhancers	Fetal Lung	lung
5	chr1:67026000-67029000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:67027200-67029600	Enhancers	Aorta	Aorta
7	chr1:67027200-67030200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:67027200-67032000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:67027400-67031400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:67027800-67029200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr1:67027800-67029600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:67027800-67029600	Enhancers	Brain Cingulate Gyrus	brain
13	chr1:67028000-67029600	Enhancers	Brain Hippocampus Middle	brain
14	chr1:67028000-67029800	Enhancers	Fetal Heart	heart
15	chr1:67028200-67029200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:67028200-67029200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr1:67028200-67029200	Flanking Active TSS	NHLF	lung
18	chr1:67028200-67029400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:67028200-67029400	Enhancers	Left Ventricle	heart
20	chr1:67028200-67029600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:67028200-67029600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:67028200-67030000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr1:67028200-67030000	Enhancers	Brain Angular Gyrus	brain
24	chr1:67028200-67030000	Enhancers	Placenta	Placenta
25	chr1:67028200-67030000	Flanking Active TSS	NHDF-Ad	bronchial
26	chr1:67028200-67030200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr1:67028200-67030200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr1:67028400-67029200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:67028400-67029600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:67028400-67029800	Enhancers	Fetal Stomach	stomach
31	chr1:67028400-67030000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr1:67028400-67030200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:67028600-67029400	Enhancers	Brain Anterior Caudate	brain
34	chr1:67028600-67030000	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr1:67028600-67030400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:67028600-67030600	Enhancers	Adipose Nuclei	Adipose
37	chr1:67028600-67030800	Weak transcription	Brain Germinal Matrix	brain
38	chr1:67028600-67031000	Enhancers	HMEC	breast
39	chr1:67028800-67029000	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:67028800-67029000	Weak transcription	Right Ventricle	heart
41	chr1:67028800-67029200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr1:67028800-67029200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:67028800-67029200	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr1:67028800-67029200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:67028800-67029400	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr1:67028800-67029400	Flanking Active TSS	Hela-S3	cervix
47	chr1:67028800-67029600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr1:67028800-67029600	Flanking Active TSS	HSMM	muscle
49	chr1:67028800-67029800	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr1:67028800-67029800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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