Variant report

Variant	rs12122384
Chromosome Location	chr1:67032522-67032523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10749761	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10749762	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10889628	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1338190	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1856319	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3795530	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1210	chr1:67017295-67033203	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67029200-67033600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:67029200-67042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:67029400-67040800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:67029400-67041400	Weak transcription	Left Ventricle	heart
5	chr1:67029600-67041400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:67029600-67041600	Weak transcription	Aorta	Aorta
7	chr1:67029800-67040200	Weak transcription	Fetal Heart	heart
8	chr1:67030000-67036400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:67030800-67035600	Weak transcription	NH-A	brain
10	chr1:67030800-67036200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:67030800-67037400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:67030800-67037400	Weak transcription	HSMM	muscle
13	chr1:67031000-67035600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:67031000-67035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:67031000-67035600	Weak transcription	NHEK	skin
16	chr1:67031000-67036000	Weak transcription	HMEC	breast
17	chr1:67031000-67036000	Weak transcription	NHLF	lung
18	chr1:67031200-67036200	Weak transcription	Osteobl	bone
19	chr1:67031400-67035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:67031400-67037400	Weak transcription	Hela-S3	cervix
21	chr1:67031600-67035600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:67031600-67035800	Weak transcription	NHDF-Ad	bronchial
23	chr1:67032000-67034600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:67032000-67036000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:67032000-67041400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:67032200-67035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links