Variant report

Variant	rs1338190
Chromosome Location	chr1:67031047-67031048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10493412	0.91[CEU][hapmap]
rs10749761	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10749762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10889628	0.83[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10889630	0.92[CEU][hapmap]
rs11208921	0.91[CEU][hapmap]
rs11208933	0.91[CEU][hapmap]
rs1159632	0.91[CEU][hapmap]
rs12081718	0.91[CEU][hapmap]
rs12117202	0.91[CEU][hapmap]
rs12122384	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12137531	0.91[CEU][hapmap]
rs12141816	0.91[CEU][hapmap]
rs1325262	0.92[CEU][hapmap]
rs1338188	0.91[CEU][hapmap]
rs1338189	0.92[CEU][hapmap]
rs17129256	0.91[CEU][hapmap]
rs17436311	0.91[CEU][hapmap]
rs1856319	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3795530	0.98[ASN][1000 genomes]
rs4147266	0.92[CEU][hapmap]
rs6687096	0.91[CEU][hapmap]
rs6699200	0.83[CEU][hapmap]
rs7548488	0.92[CEU][hapmap]
rs975878	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1210	chr1:67017295-67033203	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67025000-67031600	Enhancers	Fetal Lung	lung
2	chr1:67027200-67032000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:67027400-67031400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:67028800-67031400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:67029200-67033600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:67029200-67042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:67029400-67040800	Weak transcription	Brain Anterior Caudate	brain
8	chr1:67029400-67041400	Weak transcription	Left Ventricle	heart
9	chr1:67029600-67041400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:67029600-67041600	Weak transcription	Aorta	Aorta
11	chr1:67029800-67032000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:67029800-67040200	Weak transcription	Fetal Heart	heart
13	chr1:67030000-67031200	Enhancers	Osteobl	bone
14	chr1:67030000-67031400	Enhancers	Hela-S3	cervix
15	chr1:67030000-67031400	Enhancers	HUVEC	blood vessel
16	chr1:67030000-67036400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:67030400-67031600	Enhancers	NHDF-Ad	bronchial
18	chr1:67030600-67031600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:67030800-67032000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:67030800-67035600	Weak transcription	NH-A	brain
21	chr1:67030800-67036200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:67030800-67037400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:67030800-67037400	Weak transcription	HSMM	muscle
24	chr1:67031000-67031400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:67031000-67035600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:67031000-67035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:67031000-67035600	Weak transcription	NHEK	skin
28	chr1:67031000-67036000	Weak transcription	HMEC	breast
29	chr1:67031000-67036000	Weak transcription	NHLF	lung

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