Variant report

Variant	rs6687096
Chromosome Location	chr1:67041956-67041957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10493412	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10493413	0.86[CHB][hapmap]
rs10789209	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10889628	0.90[CEU][hapmap]
rs10889630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889631	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889632	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889645	0.85[JPT][hapmap]
rs10889646	0.85[CEU][hapmap]
rs11208921	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11208933	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11208935	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11208943	0.85[CEU][hapmap];0.84[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap]
rs11208946	0.85[CEU][hapmap];0.84[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap]
rs1159632	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12072369	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12077192	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12081718	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12117202	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs12124223	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137531	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12141816	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12407460	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs1325262	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1325264	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1338188	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338189	1.00[CEU][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338190	0.91[CEU][hapmap]
rs1536112	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs17129256	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17129315	0.85[JPT][hapmap]
rs17129318	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17436311	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1813888	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998716	0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2025594	0.85[CEU][hapmap]
rs2147776	0.81[ASN][1000 genomes]
rs41309179	0.93[ASN][1000 genomes]
rs4147266	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55830106	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56283052	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56374735	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6689755	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6692318	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6699200	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703606	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs72669456	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72670253	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515818	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7530439	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7548488	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs975878	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013351	chr1:67039730-67055937	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67029200-67042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:67038000-67042400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:67038000-67042400	Weak transcription	HSMM	muscle
4	chr1:67038000-67043400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:67038200-67042000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:67038200-67042400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:67038200-67042400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:67038200-67042600	Weak transcription	Osteobl	bone
9	chr1:67039800-67042600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:67040200-67042000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:67040200-67044200	Enhancers	Fetal Heart	heart
12	chr1:67040400-67042000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:67040400-67042000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:67040600-67043200	Enhancers	Fetal Lung	lung
15	chr1:67040600-67044200	Enhancers	NHLF	lung
16	chr1:67040800-67042800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:67040800-67043200	Enhancers	NHEK	skin
18	chr1:67040800-67044000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:67040800-67044800	Enhancers	NHDF-Ad	bronchial
20	chr1:67041000-67042800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:67041000-67043400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:67041400-67042000	Enhancers	Left Ventricle	heart
23	chr1:67041400-67042000	Enhancers	HMEC	breast
24	chr1:67041400-67042800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:67041400-67043000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:67041400-67043200	Enhancers	Brain Angular Gyrus	brain
27	chr1:67041400-67043200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr1:67041400-67043600	Enhancers	Brain Hippocampus Middle	brain
29	chr1:67041400-67044200	Enhancers	NH-A	brain
30	chr1:67041400-67045600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:67041600-67042400	Weak transcription	Brain Anterior Caudate	brain
32	chr1:67041600-67042400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr1:67041600-67042600	Enhancers	Aorta	Aorta
34	chr1:67041600-67042800	Enhancers	Fetal Stomach	stomach
35	chr1:67041600-67043200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr1:67041600-67043600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:67041600-67043600	Enhancers	Brain Substantia Nigra	brain
38	chr1:67041600-67062400	Weak transcription	Stomach Smooth Muscle	stomach

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