Variant report

Variant	rs1325262
Chromosome Location	chr1:67111032-67111033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67110643..67112907-chr1:67115103..67117381,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10493412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10493413	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10789209	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889628	0.91[CEU][hapmap]
rs10889630	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10889631	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10889632	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10889646	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs11208921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208943	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs11208946	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs1159632	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12072369	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12077192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081718	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12117202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12124223	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12137531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12407460	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs1325264	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs1338188	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1338189	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1338190	0.92[CEU][hapmap]
rs1536112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17129256	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129302	0.83[ASN][1000 genomes]
rs17129310	0.85[ASN][1000 genomes]
rs17129313	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs17129315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17129318	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs17436311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1813888	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1998716	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2025594	0.86[CEU][hapmap];0.88[JPT][hapmap]
rs2147776	1.00[ASN][1000 genomes]
rs41309179	0.87[ASN][1000 genomes]
rs4147266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs45467391	0.81[ASN][1000 genomes]
rs55830106	0.87[AMR][1000 genomes]
rs56283052	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56374735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687096	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6689755	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6692318	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs6699200	0.92[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6703606	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs72669456	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72669476	0.85[ASN][1000 genomes]
rs72669484	0.82[ASN][1000 genomes]
rs72670253	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7515818	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7530439	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7548488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975878	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67088400-67114200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
3	chr1:67091200-67128000	Weak transcription	NH-A	brain
4	chr1:67092000-67117200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:67092200-67114200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:67099400-67115600	Weak transcription	Fetal Lung	lung
7	chr1:67100000-67144400	Weak transcription	Left Ventricle	heart
8	chr1:67101200-67113600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:67102800-67120200	Weak transcription	Brain Germinal Matrix	brain
10	chr1:67103200-67112200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:67106200-67143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:67106800-67115800	Weak transcription	Fetal Brain Male	brain
13	chr1:67107200-67112800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:67107200-67114200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:67108000-67136200	Weak transcription	Fetal Brain Female	brain
16	chr1:67109000-67117800	Weak transcription	Osteobl	bone
17	chr1:67109200-67120200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:67109200-67141800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:67109600-67113600	Weak transcription	NHLF	lung
20	chr1:67109600-67134200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:67109600-67155000	Weak transcription	Brain Anterior Caudate	brain
22	chr1:67110200-67116400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:67110200-67118800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:67110400-67112800	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:67110800-67111400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:67110800-67111800	Strong transcription	Aorta	Aorta
27	chr1:67110800-67114200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:67110800-67118400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:67110800-67134400	Weak transcription	Brain Substantia Nigra	brain
30	chr1:67111000-67115200	Weak transcription	NHDF-Ad	bronchial
31	chr1:67111000-67120400	Weak transcription	Brain Angular Gyrus	brain
32	chr1:67111000-67135200	Weak transcription	Brain Inferior Temporal Lobe	brain

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