Variant report

Variant	rs10889628
Chromosome Location	chr1:67025961-67025962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10493410	0.85[ASN][1000 genomes]
rs10493412	0.90[CEU][hapmap]
rs10749761	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10749762	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10889630	0.91[CEU][hapmap]
rs11208909	0.81[ASN][1000 genomes]
rs11208921	0.89[CEU][hapmap]
rs11208933	0.90[CEU][hapmap]
rs1159632	0.90[CEU][hapmap]
rs1159851	0.81[ASN][1000 genomes]
rs1159852	0.81[ASN][1000 genomes]
rs11799970	0.81[ASN][1000 genomes]
rs11806387	0.81[ASN][1000 genomes]
rs12041078	0.82[ASN][1000 genomes]
rs12081718	0.90[CEU][hapmap]
rs12117202	0.90[CEU][hapmap]
rs12121959	0.81[ASN][1000 genomes]
rs12122384	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12124690	0.89[ASN][1000 genomes]
rs12125455	0.81[ASN][1000 genomes]
rs12128429	0.81[ASN][1000 genomes]
rs12128496	0.81[ASN][1000 genomes]
rs12131909	0.81[ASN][1000 genomes]
rs12137531	0.89[CEU][hapmap]
rs12141816	0.90[CEU][hapmap]
rs12725322	0.81[ASN][1000 genomes]
rs12731104	0.81[ASN][1000 genomes]
rs12731112	0.81[ASN][1000 genomes]
rs12741427	0.81[ASN][1000 genomes]
rs12751879	0.81[ASN][1000 genomes]
rs1325262	0.91[CEU][hapmap]
rs1338188	0.90[CEU][hapmap]
rs1338189	0.91[CEU][hapmap]
rs1338190	0.83[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1373910	0.81[ASN][1000 genomes]
rs17129256	0.90[CEU][hapmap]
rs17436311	0.90[CEU][hapmap]
rs1856319	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1975523	0.81[ASN][1000 genomes]
rs2121041	0.81[ASN][1000 genomes]
rs2218498	0.81[ASN][1000 genomes]
rs4147266	0.91[CEU][hapmap]
rs4655496	0.81[ASN][1000 genomes]
rs4655497	0.81[ASN][1000 genomes]
rs4655619	0.81[ASN][1000 genomes]
rs4655621	0.81[ASN][1000 genomes]
rs4655622	0.80[ASN][1000 genomes]
rs4655624	0.81[ASN][1000 genomes]
rs4655625	0.81[ASN][1000 genomes]
rs4655626	0.81[ASN][1000 genomes]
rs6687096	0.90[CEU][hapmap]
rs7548488	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1210	chr1:67017295-67033203	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:67009800-67028200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:67010000-67029000	Weak transcription	Fetal Kidney	kidney
4	chr1:67011000-67028000	Weak transcription	HUVEC	blood vessel
5	chr1:67011800-67029800	Weak transcription	Fetal Brain Male	brain
6	chr1:67019000-67028600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:67020200-67028200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:67022200-67027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:67022400-67027200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:67022400-67028200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:67022400-67028200	Weak transcription	Left Ventricle	heart
12	chr1:67022400-67028200	Weak transcription	NH-A	brain
13	chr1:67022400-67028400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:67022400-67028400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:67023000-67028400	Weak transcription	NHEK	skin
16	chr1:67023200-67027600	Weak transcription	Osteobl	bone
17	chr1:67023400-67027600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:67023400-67028000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:67023400-67028600	Weak transcription	Brain Anterior Caudate	brain
20	chr1:67023400-67028800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:67023600-67028200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:67023800-67027400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:67023800-67028800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:67024000-67026400	Weak transcription	NHDF-Ad	bronchial
25	chr1:67024000-67028200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:67024800-67026200	Enhancers	Fetal Heart	heart
27	chr1:67025000-67026000	Enhancers	Brain Cingulate Gyrus	brain
28	chr1:67025000-67026000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr1:67025000-67031600	Enhancers	Fetal Lung	lung
30	chr1:67025200-67026000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:67025400-67026200	Enhancers	Brain Angular Gyrus	brain
32	chr1:67025400-67026400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:67025400-67027200	Weak transcription	NHLF	lung
34	chr1:67025600-67026000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:67025600-67027200	Weak transcription	Aorta	Aorta
36	chr1:67025600-67027400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:67025600-67028000	Weak transcription	Brain Hippocampus Middle	brain
38	chr1:67025600-67028800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:67025800-67026000	Enhancers	Brain Substantia Nigra	brain

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