Variant report

Variant	rs11208921
Chromosome Location	chr1:67076054-67076055
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10493412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493413	1.00[CHB][hapmap]
rs10789209	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889628	0.89[CEU][hapmap]
rs10889630	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10889631	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10889632	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10889646	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs11208933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208935	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208943	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs11208946	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs1159632	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12072369	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077192	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12081718	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12117202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12124223	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12137531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12141816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407460	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1325262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1325264	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1338188	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1338189	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1338190	0.91[CEU][hapmap]
rs1536112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17129256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17129313	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17129315	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17129318	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17436311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813888	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1998716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2025594	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs2147776	0.87[ASN][1000 genomes]
rs41309179	1.00[ASN][1000 genomes]
rs4147266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830106	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56283052	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56374735	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6687096	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6689755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6692318	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6699200	0.91[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6703606	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs72669456	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72670253	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7515818	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530439	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs975878	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67065600-67077000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:67065800-67078800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:67065800-67082800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:67066200-67083800	Weak transcription	NHLF	lung
6	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
7	chr1:67066600-67077800	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:67068000-67082600	Weak transcription	NHDF-Ad	bronchial
9	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:67073200-67079000	Weak transcription	Aorta	Aorta
11	chr1:67074000-67081200	Weak transcription	Brain Anterior Caudate	brain
12	chr1:67074600-67078000	Weak transcription	Brain Substantia Nigra	brain
13	chr1:67075200-67077400	Weak transcription	Fetal Lung	lung
14	chr1:67075400-67077000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:67075400-67077000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:67075400-67077600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:67075400-67079400	Weak transcription	Fetal Heart	heart
18	chr1:67075800-67077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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