Variant report

Variant	rs10749940
Chromosome Location	chr11:109138454-109138455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10736447	1.00[AMR][1000 genomes]
rs10749936	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10749938	1.00[AMR][1000 genomes]
rs10749939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10890962	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10890964	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1586019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1600825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1825165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1905080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1995846	1.00[AMR][1000 genomes]
rs2357421	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4027364	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4754388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55861578	1.00[AMR][1000 genomes]
rs6589061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7105685	1.00[AMR][1000 genomes]
rs7126457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1053898	chr11:109075527-109140982	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1041669	chr11:109085822-109282528	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1851153	chr11:109097430-109156782	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109137400-109139400	Enhancers	HMEC	breast
2	chr11:109137600-109139400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:109137800-109139400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:109138000-109138800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:109138000-109139000	Weak transcription	Esophagus	oesophagus
6	chr11:109138400-109146200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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