Variant report
| Variant | rs55861578 |
|---|---|
| Chromosome Location | chr11:109215723-109215724 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:109211476..109214893-chr11:109215512..109220497,5 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10736447 | 1.00[AMR][1000 genomes] |
| rs10749936 | 1.00[AMR][1000 genomes] |
| rs10749938 | 1.00[AMR][1000 genomes] |
| rs10749939 | 1.00[AMR][1000 genomes] |
| rs10749940 | 1.00[AMR][1000 genomes] |
| rs10890962 | 1.00[AMR][1000 genomes] |
| rs10890964 | 1.00[AMR][1000 genomes] |
| rs1552155 | 1.00[AMR][1000 genomes] |
| rs1586019 | 1.00[AMR][1000 genomes] |
| rs1600825 | 1.00[AMR][1000 genomes] |
| rs1825165 | 1.00[AMR][1000 genomes] |
| rs1905080 | 1.00[AMR][1000 genomes] |
| rs1995846 | 1.00[AMR][1000 genomes] |
| rs2357421 | 1.00[AMR][1000 genomes] |
| rs4027364 | 1.00[AMR][1000 genomes] |
| rs4754388 | 1.00[AMR][1000 genomes] |
| rs56209429 | 1.00[AFR][1000 genomes] |
| rs6589061 | 1.00[AMR][1000 genomes] |
| rs7105685 | 1.00[AMR][1000 genomes] |
| rs7126457 | 1.00[AMR][1000 genomes] |
| rs7927073 | 1.00[AMR][1000 genomes] |
| rs7951369 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041669 | chr11:109085822-109282528 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:109214800-109218000 | Weak transcription | Fetal Heart | heart |
