Variant report

Variant	rs2357421
Chromosome Location	chr11:109069720-109069721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10736447	1.00[AMR][1000 genomes]
rs10749936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10749938	1.00[AMR][1000 genomes]
rs10749939	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10749940	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10890962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10890964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552155	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1586019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1600825	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1825165	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1905080	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1995846	1.00[AMR][1000 genomes]
rs4027364	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4754388	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55861578	1.00[AMR][1000 genomes]
rs6589061	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7105685	1.00[AMR][1000 genomes]
rs7126457	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927073	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951369	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109068800-109108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:109069000-109073200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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