Variant report

Variant	rs1995846
Chromosome Location	chr11:109020558-109020559
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10736447	1.00[AMR][1000 genomes]
rs10749936	1.00[AMR][1000 genomes]
rs10749938	1.00[AMR][1000 genomes]
rs10749939	1.00[AMR][1000 genomes]
rs10749940	1.00[AMR][1000 genomes]
rs10890962	1.00[AMR][1000 genomes]
rs10890964	1.00[AMR][1000 genomes]
rs1552155	1.00[AMR][1000 genomes]
rs1586019	1.00[AMR][1000 genomes]
rs1600825	1.00[AMR][1000 genomes]
rs1825165	1.00[AMR][1000 genomes]
rs1905080	1.00[AMR][1000 genomes]
rs2357421	1.00[AMR][1000 genomes]
rs4027364	1.00[AMR][1000 genomes]
rs4754388	1.00[AMR][1000 genomes]
rs55861578	1.00[AMR][1000 genomes]
rs6589061	1.00[AMR][1000 genomes]
rs7105685	1.00[AMR][1000 genomes]
rs7126457	1.00[AMR][1000 genomes]
rs7927073	1.00[AMR][1000 genomes]
rs7951369	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109012000-109021200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:109012000-109021400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:109019000-109020600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:109020200-109021200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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