Variant report

Variant	rs10750173
Chromosome Location	chr11:120288368-120288369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120106135..120107749-chr11:120285684..120288483,2	K562	blood:

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10502235	0.90[JPT][hapmap]
rs10750172	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10750174	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790378	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10790380	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10790382	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790383	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10892562	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10892563	0.92[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10892564	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10892566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10892567	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10892570	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10892574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892576	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10892578	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892582	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217821	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11217840	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217841	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217852	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217874	0.85[JPT][hapmap]
rs11217875	0.89[JPT][hapmap]
rs11217887	0.81[EUR][1000 genomes]
rs11600703	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11601535	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11827818	0.84[JPT][hapmap]
rs12361632	0.83[EUR][1000 genomes]
rs12417256	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12417581	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420378	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12787285	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12794946	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12806740	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs1373270	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1892894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1893261	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs2276035	0.84[JPT][hapmap]
rs2305008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2305010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34298380	0.81[AMR][1000 genomes]
rs3809059	0.81[JPT][hapmap]
rs4381380	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4539328	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4936517	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4938799	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4938801	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4938804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4938805	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4938806	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4938807	0.90[JPT][hapmap]
rs4938808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs496248	0.82[JPT][hapmap]
rs632137	0.81[JPT][hapmap]
rs6589810	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6589811	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6589812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6589813	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7101415	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7104639	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107211	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7115714	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7117063	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117321	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7118391	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7121779	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7126328	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7129944	0.90[JPT][hapmap]
rs7131046	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7131597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs723937	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7478880	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924772	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7924963	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7924975	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7932037	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7932658	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7933086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7937612	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7939137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7948928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7951250	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952529	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs894839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9633919	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9633950	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv529003	chr11:120209386-120355230	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046430	chr11:120238962-120294026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1043248	chr11:120238962-120299598	Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1051672	chr11:120238962-120314178	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1051783	chr11:120246224-120314178	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120265800-120295600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:120269200-120295200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:120270400-120292200	Weak transcription	Fetal Stomach	stomach
4	chr11:120271600-120300200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:120272000-120288400	Weak transcription	Aorta	Aorta
6	chr11:120272000-120291200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:120272000-120291400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:120272000-120302400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:120272200-120291400	Weak transcription	GM12878-XiMat	blood
10	chr11:120272200-120292600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:120272200-120292800	Weak transcription	Fetal Kidney	kidney
12	chr11:120272200-120295200	Weak transcription	Brain Angular Gyrus	brain
13	chr11:120272200-120295200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:120272200-120299000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:120272200-120315600	Weak transcription	Brain Germinal Matrix	brain
16	chr11:120272200-120315800	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:120272400-120288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:120272400-120290400	Weak transcription	Fetal Intestine Large	intestine
19	chr11:120272400-120292200	Weak transcription	Fetal Intestine Small	intestine
20	chr11:120272400-120320600	Weak transcription	Psoas Muscle	Psoas
21	chr11:120272600-120288800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:120274200-120295600	Weak transcription	Pancreas	Pancrea
23	chr11:120274800-120292400	Weak transcription	HepG2	liver
24	chr11:120274800-120294800	Weak transcription	A549	lung
25	chr11:120274800-120295200	Weak transcription	Small Intestine	intestine
26	chr11:120275400-120295200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:120275600-120295200	Weak transcription	Ovary	ovary
28	chr11:120275600-120295400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:120275600-120302400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:120275600-120302600	Weak transcription	K562	blood
31	chr11:120275600-120322200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:120275800-120291400	Weak transcription	Adipose Nuclei	Adipose
33	chr11:120275800-120291400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:120275800-120300200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:120275800-120314000	Weak transcription	Right Ventricle	heart
36	chr11:120276000-120295200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:120276400-120295400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:120276600-120302200	Weak transcription	Fetal Heart	heart
39	chr11:120276800-120295400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:120277600-120319800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:120278200-120295600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr11:120278600-120289400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:120278600-120291400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:120278600-120295200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:120278800-120292600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:120278800-120295600	Weak transcription	Fetal Brain Female	brain
47	chr11:120279400-120295000	Weak transcription	Fetal Brain Male	brain
48	chr11:120280400-120291400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:120280400-120299600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:120281000-120291200	Weak transcription	NHLF	lung

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