Variant report

Variant	rs6589810
Chromosome Location	chr11:120233908-120233909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120221867..120224622-chr11:120232208..120234590,2	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10750172	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10750173	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10750174	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10790378	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10790380	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10790381	0.99[ASN][1000 genomes]
rs10790382	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10790383	0.85[EUR][1000 genomes]
rs10892562	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10892563	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10892564	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10892565	0.96[ASN][1000 genomes]
rs10892566	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10892567	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10892569	0.99[ASN][1000 genomes]
rs10892570	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10892574	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10892575	0.97[ASN][1000 genomes]
rs10892576	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10892578	0.87[EUR][1000 genomes]
rs10892582	0.86[EUR][1000 genomes]
rs11217821	0.84[EUR][1000 genomes]
rs11217840	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11217841	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11217843	0.99[ASN][1000 genomes]
rs11217852	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11217857	0.99[ASN][1000 genomes]
rs11217866	0.95[ASN][1000 genomes]
rs11217874	0.92[ASN][1000 genomes]
rs11217875	0.92[ASN][1000 genomes]
rs11217878	0.90[ASN][1000 genomes]
rs11217887	0.81[ASN][1000 genomes]
rs11600703	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11601535	0.87[EUR][1000 genomes]
rs11823264	0.97[ASN][1000 genomes]
rs11823300	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11824032	0.86[ASN][1000 genomes]
rs12270397	0.99[ASN][1000 genomes]
rs12361632	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12417256	0.87[EUR][1000 genomes]
rs12417581	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12420378	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12785387	0.84[ASN][1000 genomes]
rs12787285	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12794618	0.97[ASN][1000 genomes]
rs12794946	0.83[EUR][1000 genomes]
rs12806740	0.83[EUR][1000 genomes]
rs12807097	0.97[ASN][1000 genomes]
rs1373270	0.86[EUR][1000 genomes]
rs17123861	0.99[ASN][1000 genomes]
rs1812974	0.84[ASN][1000 genomes]
rs1892894	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1893261	0.84[EUR][1000 genomes]
rs2276035	0.90[ASN][1000 genomes]
rs2305008	0.87[EUR][1000 genomes]
rs2305010	0.87[EUR][1000 genomes]
rs34298380	0.83[EUR][1000 genomes]
rs36011588	0.83[EUR][1000 genomes]
rs4381380	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4539328	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4936517	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4936518	0.94[ASN][1000 genomes]
rs4938799	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4938801	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4938802	0.86[ASN][1000 genomes]
rs4938803	0.99[ASN][1000 genomes]
rs4938804	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4938805	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4938806	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938807	0.90[ASN][1000 genomes]
rs4938808	0.87[EUR][1000 genomes]
rs56693116	0.87[ASN][1000 genomes]
rs61898351	0.84[EUR][1000 genomes]
rs6589811	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6589812	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6589813	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7101415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104639	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7107211	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7115714	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7117063	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7117321	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7118391	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7121779	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7126328	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7129944	0.95[ASN][1000 genomes]
rs7131046	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7131597	0.85[EUR][1000 genomes]
rs723937	0.87[EUR][1000 genomes]
rs7478880	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7924772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7924963	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7924975	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7932037	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7932658	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7933086	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7937612	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7939137	0.85[EUR][1000 genomes]
rs7948928	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7951250	0.80[EUR][1000 genomes]
rs7952529	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs894839	0.86[EUR][1000 genomes]
rs9633919	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9633950	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv529003	chr11:120209386-120355230	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1050935	chr11:120224544-120276373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1036694	chr11:120230243-120285603	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1037573	chr11:120230243-120286918	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120216000-120239000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:120216400-120244800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:120217400-120234000	Weak transcription	Aorta	Aorta
4	chr11:120217600-120257000	Weak transcription	HSMM	muscle
5	chr11:120224800-120248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:120224800-120260800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:120225000-120248200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:120225200-120234400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:120225200-120242200	Weak transcription	A549	lung
10	chr11:120225200-120251000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:120225800-120242200	Weak transcription	Fetal Intestine Small	intestine
12	chr11:120226400-120242400	Weak transcription	Fetal Intestine Large	intestine
13	chr11:120226400-120246800	Weak transcription	Small Intestine	intestine
14	chr11:120229800-120234000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:120229800-120234600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:120229800-120236600	Weak transcription	GM12878-XiMat	blood
17	chr11:120230000-120234400	Weak transcription	Psoas Muscle	Psoas
18	chr11:120232000-120274800	Weak transcription	Ovary	ovary
19	chr11:120232200-120234400	Weak transcription	Gastric	stomach
20	chr11:120232200-120234400	Weak transcription	Pancreas	Pancrea
21	chr11:120232200-120238400	Weak transcription	Right Ventricle	heart
22	chr11:120232200-120238800	Weak transcription	Right Atrium	heart
23	chr11:120232400-120234000	Enhancers	NHLF	lung
24	chr11:120232400-120234200	Enhancers	HUVEC	blood vessel
25	chr11:120232800-120235000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr11:120233000-120234200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:120233000-120235000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:120233000-120245800	Weak transcription	NHDF-Ad	bronchial
29	chr11:120233200-120234200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:120233200-120234200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:120233200-120234600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:120233400-120242600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:120233600-120234000	Weak transcription	Osteobl	bone
34	chr11:120233600-120234400	Weak transcription	Left Ventricle	heart
35	chr11:120233600-120234800	Enhancers	Fetal Heart	heart
36	chr11:120233600-120236000	Weak transcription	K562	blood
37	chr11:120233800-120234600	Enhancers	HSMMtube	muscle
38	chr11:120233800-120234600	Enhancers	NHEK	skin
39	chr11:120233800-120234800	Enhancers	Skeletal Muscle Male	skeletal muscle

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