Variant report

Variant	rs7121779
Chromosome Location	chr11:120213360-120213361
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120208495..120210605-chr11:120212464..120216730,4	MCF-7	breast:
2	chr11:120205774..120210534-chr11:120211635..120216657,9	MCF-7	breast:
3	chr11:120196112..120199628-chr11:120212006..120215028,3	MCF-7	breast:
4	chr11:120212208..120214300-chr11:120217679..120220181,2	MCF-7	breast:
5	chr11:120200949..120202634-chr11:120213060..120214568,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196914	Chromatin interaction
ENSG00000181264	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10502235	0.90[JPT][hapmap]
rs10750172	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10750173	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10750174	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10790378	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10790380	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10790382	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10790383	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs10892562	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10892563	1.00[CEU][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892564	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892566	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10892567	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10892570	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10892574	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10892576	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11217821	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217840	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11217841	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11217852	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11217875	0.89[JPT][hapmap]
rs11600703	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11601535	0.83[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs11823300	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11827818	0.84[JPT][hapmap]
rs12361632	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12417581	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12420378	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12787285	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12806740	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1892894	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1893261	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276035	0.84[JPT][hapmap]
rs2305008	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2305010	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs34298380	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36011588	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3809059	0.81[JPT][hapmap]
rs4381380	0.92[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4539328	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936517	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4938799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938801	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4938804	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4938805	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4938806	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4938807	0.90[JPT][hapmap]
rs4938808	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs61898351	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs632137	0.81[JPT][hapmap]
rs6589810	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6589811	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6589812	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6589813	0.82[EUR][1000 genomes]
rs7101415	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7104639	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7107211	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7115714	0.80[EUR][1000 genomes]
rs7117063	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7117321	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7118391	0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7126328	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7126413	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7129944	0.90[JPT][hapmap]
rs7131046	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7131597	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs723937	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs7478880	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924772	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7924963	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7924975	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7932037	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7932658	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933086	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7937612	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7939137	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7948928	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7952529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894839	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs9633919	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9633950	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv529003	chr11:120209386-120355230	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120208800-120214200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:120208800-120216200	Weak transcription	Esophagus	oesophagus
3	chr11:120208800-120223400	Weak transcription	Gastric	stomach
4	chr11:120209000-120217000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:120209600-120214600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:120209600-120215200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:120209600-120216200	Weak transcription	Lung	lung
8	chr11:120209600-120224600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:120210400-120214600	Weak transcription	Placenta	Placenta
10	chr11:120210600-120214200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:120210600-120214200	Weak transcription	Spleen	Spleen
12	chr11:120210600-120214600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:120210600-120214800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:120210600-120217000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:120210600-120217000	Weak transcription	Pancreas	Pancrea
16	chr11:120210600-120218200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:120210800-120215000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:120211000-120213400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:120211000-120214000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:120211000-120214000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:120211000-120214200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:120211000-120214200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:120211000-120214200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:120211000-120214200	Weak transcription	Left Ventricle	heart
25	chr11:120211000-120214200	Weak transcription	HSMM	muscle
26	chr11:120211000-120214600	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:120211000-120215000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:120211000-120215000	Weak transcription	Fetal Lung	lung
29	chr11:120211000-120215200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:120211000-120215200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:120211000-120217000	Weak transcription	Colonic Mucosa	Colon
32	chr11:120211000-120217000	Weak transcription	Fetal Brain Male	brain
33	chr11:120211000-120217000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr11:120211000-120217400	Enhancers	Liver	Liver
35	chr11:120211000-120218600	Enhancers	Fetal Heart	heart
36	chr11:120211000-120224400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr11:120211200-120214200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:120211200-120214200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:120211200-120218600	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr11:120211400-120213400	Enhancers	HepG2	liver
41	chr11:120211400-120214000	Weak transcription	Osteobl	bone
42	chr11:120211400-120217600	Weak transcription	Brain Germinal Matrix	brain
43	chr11:120211600-120213400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:120211600-120213600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:120211600-120214000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:120211600-120214000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:120211600-120214200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:120211600-120214200	Weak transcription	NH-A	brain
49	chr11:120211600-120215200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:120211600-120215200	Weak transcription	Brain Inferior Temporal Lobe	brain

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