Variant report

Variant	rs61898351
Chromosome Location	chr11:120199924-120199925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120195229..120198097-chr11:120199757..120201964,2	K562	blood:
2	chr11:120195931..120198930-chr11:120199219..120202161,2	MCF-7	breast:
3	chr11:120196351..120198435-chr11:120198442..120200347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181264	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10750172	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10790378	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10790380	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10892562	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10892563	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10892564	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10892566	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10892567	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10892570	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11217821	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217840	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11217841	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11217852	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11600703	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11823300	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12361632	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12417581	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12420378	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12787285	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12806740	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892894	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1893261	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34298380	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36011588	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4539328	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4936517	0.85[EUR][1000 genomes]
rs4938799	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4938801	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4938804	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4938805	0.81[AMR][1000 genomes]
rs6589810	0.84[EUR][1000 genomes]
rs6589811	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6589812	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7101415	0.84[EUR][1000 genomes]
rs7104639	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7107211	0.83[AMR][1000 genomes]
rs7117063	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7117321	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7118391	0.81[ASN][1000 genomes]
rs7121779	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7126328	0.83[AMR][1000 genomes]
rs7126413	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7131046	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7478880	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7924772	0.83[EUR][1000 genomes]
rs7924963	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7924975	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7932037	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7932658	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933086	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7937612	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7948928	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7952529	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633919	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9633950	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120196400-120206400	Weak transcription	Gastric	stomach
2	chr11:120196600-120200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:120196600-120200800	Weak transcription	Esophagus	oesophagus
4	chr11:120196800-120200600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:120196800-120205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:120196800-120205800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:120196800-120206200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:120197000-120200600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:120197000-120200800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:120197000-120201800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:120197200-120200600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:120197200-120200600	Weak transcription	Adipose Nuclei	Adipose
13	chr11:120197200-120200600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:120197200-120200600	Weak transcription	Fetal Stomach	stomach
15	chr11:120197200-120200600	Weak transcription	Left Ventricle	heart
16	chr11:120197200-120200800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:120197200-120201000	Weak transcription	HMEC	breast
18	chr11:120197200-120205800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:120197200-120205800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:120197400-120200600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:120197400-120200600	Enhancers	Fetal Heart	heart
22	chr11:120197400-120200600	Weak transcription	NHEK	skin
23	chr11:120197400-120200800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:120197600-120200600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:120197600-120200600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:120197600-120205800	Weak transcription	Liver	Liver
27	chr11:120197800-120200400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:120197800-120200600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:120197800-120200600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:120197800-120200600	Weak transcription	Aorta	Aorta
31	chr11:120197800-120200600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:120197800-120205600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:120198000-120200600	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:120198000-120205200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:120198000-120205600	Enhancers	Hela-S3	cervix
36	chr11:120198200-120201400	Genic enhancers	NHLF	lung
37	chr11:120198200-120205600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:120198200-120205600	Weak transcription	HepG2	liver
39	chr11:120198400-120200600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:120198400-120200600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:120198400-120200600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:120198400-120200600	Weak transcription	Brain Germinal Matrix	brain
43	chr11:120198400-120200600	Weak transcription	Fetal Brain Female	brain
44	chr11:120198400-120200600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:120198400-120200600	Weak transcription	Placenta	Placenta
46	chr11:120198400-120200600	Weak transcription	A549	lung
47	chr11:120198400-120200800	Weak transcription	Pancreas	Pancrea
48	chr11:120198400-120201400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:120198400-120202000	Weak transcription	Small Intestine	intestine
50	chr11:120198400-120202200	Weak transcription	Fetal Intestine Small	intestine

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