Variant report

Variant	rs10752641
Chromosome Location	chr1:154432042-154432043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154429933..154432687-chr1:154440659..154442962,2	K562	blood:
2	chr1:154425976..154427973-chr1:154430433..154433382,2	K562	blood:
3	chr1:154431187..154433172-chr1:154441462..154443845,2	K562	blood:
4	chr1:154421013..154422978-chr1:154430070..154432949,2	K562	blood:
5	chr1:154315444..154317958-chr1:154431892..154433961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160712	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10047079	0.81[AMR][1000 genomes]
rs10908839	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11490956	0.81[AMR][1000 genomes]
rs12405637	0.81[AMR][1000 genomes]
rs12406822	0.81[AMR][1000 genomes]
rs2229238	0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs35699331	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072391	0.96[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4240872	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4341355	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4379670	0.86[ASN][1000 genomes]
rs4509570	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55668699	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58710275	0.81[AMR][1000 genomes]
rs59741504	0.81[AMR][1000 genomes]
rs59838898	0.81[AMR][1000 genomes]
rs6427672	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6669229	0.82[AMR][1000 genomes]
rs6674171	0.87[CHD][hapmap];0.81[AMR][1000 genomes]
rs6687597	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698040	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73018293	0.81[AMR][1000 genomes]
rs73020232	0.81[AMR][1000 genomes]
rs73020234	0.81[AMR][1000 genomes]
rs73020246	0.81[AMR][1000 genomes]
rs7514452	0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7526293	0.82[AMR][1000 genomes]
rs7537291	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537316	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7546068	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7546552	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7546555	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551873	0.87[CHD][hapmap];0.81[AMR][1000 genomes]
rs7556449	0.87[CHD][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10752641	TDRD10	cis	lung	GTEx

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154414800-154436000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:154416200-154435800	Strong transcription	Liver	Liver
3	chr1:154418000-154440000	Weak transcription	Small Intestine	intestine
4	chr1:154418600-154432800	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr1:154419200-154432200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:154419200-154435800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:154422600-154434400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:154422600-154437600	Weak transcription	Pancreas	Pancrea
9	chr1:154424800-154436000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:154425000-154437200	Weak transcription	Fetal Stomach	stomach
11	chr1:154426000-154434200	Weak transcription	Placenta	Placenta
12	chr1:154426000-154436200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:154426200-154433600	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:154426200-154434400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:154426200-154436000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:154426400-154432800	Strong transcription	Lung	lung
17	chr1:154426400-154434800	Strong transcription	Stomach Smooth Muscle	stomach
18	chr1:154426400-154435600	Weak transcription	Stomach Mucosa	stomach
19	chr1:154426400-154436000	Weak transcription	Esophagus	oesophagus
20	chr1:154426400-154436000	Weak transcription	Fetal Lung	lung
21	chr1:154426400-154438000	Weak transcription	Psoas Muscle	Psoas
22	chr1:154426600-154432400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr1:154426600-154434800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:154426600-154435400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:154426600-154435800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:154426600-154435800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:154426600-154435800	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:154426600-154440600	Weak transcription	Brain Angular Gyrus	brain
29	chr1:154426800-154434400	Weak transcription	Hela-S3	cervix
30	chr1:154426800-154435200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:154426800-154435800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:154426800-154435800	Weak transcription	Osteobl	bone
33	chr1:154426800-154436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:154426800-154441200	Weak transcription	Brain Substantia Nigra	brain
35	chr1:154426800-154442200	Weak transcription	HepG2	liver
36	chr1:154426800-154450000	Weak transcription	Fetal Intestine Small	intestine
37	chr1:154427000-154435400	Weak transcription	HMEC	breast
38	chr1:154427000-154435600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr1:154427200-154432400	Weak transcription	Fetal Thymus	thymus
40	chr1:154427400-154435000	Weak transcription	NHDF-Ad	bronchial
41	chr1:154427600-154436000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:154427800-154433000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr1:154427800-154434200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr1:154427800-154435600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:154427800-154435600	Weak transcription	NHEK	skin
46	chr1:154427800-154435800	Weak transcription	NHLF	lung
47	chr1:154427800-154436000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:154427800-154464800	Weak transcription	Ovary	ovary
49	chr1:154428600-154437600	Weak transcription	Gastric	stomach
50	chr1:154428800-154433000	Strong transcription	Colon Smooth Muscle	Colon

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