Variant report

Variant rs2229238
Chromosome Location chr1:154437896-154437897
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:154418000-154440000 Weak transcription Small Intestine intestine
2 chr1:154426400-154438000 Weak transcription Psoas Muscle Psoas
3 chr1:154426600-154440600 Weak transcription Brain Angular Gyrus brain
4 chr1:154426800-154441200 Weak transcription Brain Substantia Nigra brain
5 chr1:154426800-154442200 Weak transcription HepG2 liver
6 chr1:154426800-154450000 Weak transcription Fetal Intestine Small intestine
7 chr1:154427800-154464800 Weak transcription Ovary ovary
8 chr1:154429800-154446200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:154430400-154438800 Weak transcription Primary B cells from cord blood blood
10 chr1:154431600-154441400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr1:154432000-154442000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
12 chr1:154434400-154438600 Enhancers Primary T killer naive cells fromperipheralblood blood
13 chr1:154434800-154439600 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr1:154435200-154441000 Enhancers Primary Natural Killer cells fromperipheralblood blood
15 chr1:154435600-154440000 Enhancers Primary hematopoietic stem cells blood
16 chr1:154435600-154441400 Enhancers Fetal Thymus thymus
17 chr1:154435800-154438200 Enhancers HSMMtube muscle
18 chr1:154436000-154438600 Strong transcription Breast Myoepithelial Primary Cells Breast
19 chr1:154436000-154439000 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
20 chr1:154436200-154438200 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:154436200-154440800 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr1:154436200-154441000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr1:154436200-154441200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr1:154436400-154438000 Enhancers Primary T cells from cord blood blood
25 chr1:154436400-154438000 Weak transcription Right Ventricle heart
26 chr1:154436400-154438200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr1:154436400-154438200 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:154436400-154438400 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
29 chr1:154436400-154438600 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr1:154436400-154441800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:154436400-154446400 Weak transcription NHEK skin
32 chr1:154436400-154446600 Weak transcription HMEC breast
33 chr1:154436600-154438000 Weak transcription Brain Anterior Caudate brain
34 chr1:154436600-154438400 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr1:154436600-154438400 Strong transcription Primary neutrophils fromperipheralblood blood
36 chr1:154436600-154438400 Weak transcription Right Atrium heart
37 chr1:154436600-154438600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:154436600-154438600 Weak transcription K562 blood
39 chr1:154436600-154438800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr1:154436600-154439400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr1:154436600-154440600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr1:154436600-154441000 Weak transcription Brain Cingulate Gyrus brain
43 chr1:154436600-154441200 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr1:154436600-154441200 Weak transcription Fetal Brain Male brain
45 chr1:154436600-154441600 Enhancers Primary T killer memory cells from peripheral blood blood
46 chr1:154436600-154441600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr1:154436600-154446800 Weak transcription NHDF-Ad bronchial
48 chr1:154436600-154450600 Weak transcription HUVEC blood vessel
49 chr1:154437200-154438600 Strong transcription Fetal Adrenal Gland Adrenal Gland
50 chr1:154437200-154439200 Enhancers Cortex derived primary cultured neurospheres brain

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