The 2.0 version of rSNPBase

Variant report

Variant rs58348886
Chromosome Location chr1:154446198-154446199
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:154426800-154450000 Weak transcription Fetal Intestine Small intestine
2 chr1:154427800-154464800 Weak transcription Ovary ovary
3 chr1:154429800-154446200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:154436400-154446400 Weak transcription NHEK skin
5 chr1:154436400-154446600 Weak transcription HMEC breast
6 chr1:154436600-154446800 Weak transcription NHDF-Ad bronchial
7 chr1:154436600-154450600 Weak transcription HUVEC blood vessel
8 chr1:154438400-154457800 Weak transcription Pancreas Pancrea
9 chr1:154438400-154458400 Weak transcription Gastric stomach
10 chr1:154438400-154463400 Weak transcription Esophagus oesophagus
11 chr1:154438600-154446800 Weak transcription NHLF lung
12 chr1:154438800-154446400 Weak transcription Rectal Smooth Muscle rectum
13 chr1:154438800-154447200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:154438800-154450800 Weak transcription Primary T cells from cord blood blood
15 chr1:154438800-154454000 Weak transcription Psoas Muscle Psoas
16 chr1:154439400-154457600 Weak transcription Placenta Placenta
17 chr1:154440000-154452800 Weak transcription Primary hematopoietic stem cells blood
18 chr1:154440000-154458200 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:154440400-154446400 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr1:154441200-154450600 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr1:154441400-154450600 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr1:154441400-154451000 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr1:154441600-154446400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr1:154441600-154446600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:154441600-154446600 Weak transcription Lung lung
26 chr1:154441600-154447200 Weak transcription Monocytes-CD14+_RO01746 blood
27 chr1:154441600-154449400 Weak transcription Primary T helper cells PMA-I stimulated --
28 chr1:154441600-154451000 Weak transcription Primary T killer memory cells from peripheral blood blood
29 chr1:154441600-154451000 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:154441600-154465200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr1:154442000-154450600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr1:154442400-154447200 Weak transcription Primary monocytes fromperipheralblood blood
33 chr1:154442400-154455200 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr1:154442400-154455800 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:154442600-154446600 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr1:154442600-154446600 Weak transcription Brain Cingulate Gyrus brain
37 chr1:154442600-154447200 Weak transcription HepG2 liver
38 chr1:154442800-154446400 Weak transcription Brain Hippocampus Middle brain
39 chr1:154442800-154446400 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr1:154442800-154446400 Weak transcription Stomach Mucosa stomach
41 chr1:154442800-154446600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr1:154442800-154446600 Weak transcription Brain Inferior Temporal Lobe brain
43 chr1:154442800-154446600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr1:154442800-154446600 Weak transcription Brain Substantia Nigra brain
45 chr1:154442800-154446600 Weak transcription Colonic Mucosa Colon
46 chr1:154442800-154449600 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:154442800-154452200 Weak transcription Brain Anterior Caudate brain
48 chr1:154442800-154452600 Weak transcription Stomach Smooth Muscle stomach
49 chr1:154442800-154455600 Weak transcription Left Ventricle heart
50 chr1:154442800-154456400 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015