Variant report

Variant	rs10753070
Chromosome Location	chr1:173086517-173086518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10912533	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11799493	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12034497	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743990	0.97[EUR][1000 genomes]
rs2422272	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901697	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916297	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916304	0.97[EUR][1000 genomes]
rs4916306	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6413826	0.92[EUR][1000 genomes]
rs6425203	0.83[EUR][1000 genomes]
rs6425205	0.92[EUR][1000 genomes]
rs6674831	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9286880	0.86[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.94[ASN][1000 genomes]
rs974363	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173081600-173091200	Weak transcription	NHDF-Ad	bronchial
2	chr1:173082400-173091200	Weak transcription	NHLF	lung
3	chr1:173082800-173091000	Weak transcription	HSMM	muscle
4	chr1:173084400-173091000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:173085800-173086600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr1:173085800-173087000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:173085800-173087600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:173086200-173086600	Enhancers	Fetal Heart	heart
9	chr1:173086200-173087200	Enhancers	GM12878-XiMat	blood
10	chr1:173086400-173087000	Enhancers	Fetal Lung	lung
11	chr1:173086400-173087000	Enhancers	HUVEC	blood vessel
12	chr1:173086400-173088800	Enhancers	Primary B cells from peripheral blood	blood
13	chr1:173086400-173089000	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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