Variant report

Variant	rs11799493
Chromosome Location	chr1:173026967-173026968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10753070	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10912533	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12034497	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12743990	0.83[EUR][1000 genomes]
rs2422272	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2901697	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4916297	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916304	0.83[EUR][1000 genomes]
rs4916306	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6413826	0.86[EUR][1000 genomes]
rs6425203	0.91[EUR][1000 genomes]
rs6425205	0.87[EUR][1000 genomes]
rs6674831	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9286880	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425406	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs974363	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173022000-173027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:173022400-173031000	Weak transcription	HUVEC	blood vessel
3	chr1:173022600-173030600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:173025800-173030800	Weak transcription	HMEC	breast
5	chr1:173026000-173027200	Weak transcription	Fetal Lung	lung
6	chr1:173026000-173031400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:173026200-173030600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:173026200-173030600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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