Variant report

Variant	rs4916304
Chromosome Location	chr1:173082782-173082783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10753070	0.97[EUR][1000 genomes]
rs10912533	0.94[EUR][1000 genomes]
rs11799493	0.83[EUR][1000 genomes]
rs12034497	0.99[EUR][1000 genomes]
rs12743990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422272	0.85[EUR][1000 genomes]
rs2901697	0.85[EUR][1000 genomes]
rs4916297	0.85[EUR][1000 genomes]
rs4916306	0.99[EUR][1000 genomes]
rs6413826	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6425203	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6425205	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6674831	0.94[EUR][1000 genomes]
rs974363	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173080400-173082800	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:173080400-173083200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr1:173080400-173083800	Enhancers	Primary B cells from cord blood	blood
4	chr1:173080400-173084000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:173080600-173083800	Enhancers	HUVEC	blood vessel
6	chr1:173080800-173082800	Enhancers	GM12878-XiMat	blood
7	chr1:173081000-173083000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:173081000-173083800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:173081200-173083000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:173081200-173083000	Enhancers	HMEC	breast
11	chr1:173081200-173083400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:173081200-173084000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:173081200-173084000	Enhancers	NHEK	skin
14	chr1:173081600-173083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:173081600-173083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:173081600-173091200	Weak transcription	NHDF-Ad	bronchial
17	chr1:173081800-173083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr1:173082000-173082800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:173082200-173082800	Enhancers	NH-A	brain
20	chr1:173082400-173091200	Weak transcription	NHLF	lung
21	chr1:173082600-173082800	ZNF genes & repeats	HSMM	muscle

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