Variant report

Variant	rs6425203
Chromosome Location	chr1:173064279-173064280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10753070	0.83[EUR][1000 genomes]
rs10912533	0.88[EUR][1000 genomes]
rs11799493	0.91[EUR][1000 genomes]
rs12034497	0.84[EUR][1000 genomes]
rs12743990	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2422272	0.95[EUR][1000 genomes]
rs2901697	0.95[EUR][1000 genomes]
rs4916297	0.93[EUR][1000 genomes]
rs4916304	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4916306	0.84[EUR][1000 genomes]
rs6413826	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425205	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6674831	0.88[EUR][1000 genomes]
rs9286880	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs9425406	0.89[EUR][1000 genomes]
rs974363	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173062400-173066600	Enhancers	NHDF-Ad	bronchial
2	chr1:173062600-173066400	Enhancers	HMEC	breast
3	chr1:173063000-173066400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:173063200-173066000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:173063400-173064400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:173063400-173064400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:173063400-173064600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:173063400-173064600	Weak transcription	NHEK	skin
9	chr1:173063400-173065200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:173063600-173064600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:173063800-173066200	Enhancers	HSMM	muscle
12	chr1:173064000-173066400	Enhancers	Osteobl	bone
13	chr1:173064200-173065400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:173064200-173066400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:173064200-173066600	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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