Variant report

Variant	rs10765659
Chromosome Location	chr11:93937158-93937159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93932886..93934765-chr11:93936534..93938531,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10765660	0.81[AMR][1000 genomes]
rs10831175	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12362988	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1257950	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1541299	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1792632	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4753548	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs519834	0.81[EUR][1000 genomes]
rs526036	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs528327	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs532037	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs545450	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs552267	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs556758	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs561807	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs579574	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs581123	0.81[EUR][1000 genomes]
rs584109	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs603157	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs656810	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs657242	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs657896	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs669634	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs688910	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs871244	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1038294	chr11:93918837-93982605	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93920400-93937800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:93926800-93938800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:93934200-93937200	Enhancers	Fetal Lung	lung
4	chr11:93936800-93937200	Enhancers	HepG2	liver

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