Variant report

Variant	rs12362988
Chromosome Location	chr11:93936112-93936113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93928773..93931046-chr11:93935026..93936548,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1014499	0.85[AMR][1000 genomes]
rs10458852	0.82[AMR][1000 genomes]
rs10765657	0.82[AMR][1000 genomes]
rs10765658	0.82[AMR][1000 genomes]
rs10765659	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10765660	0.86[AMR][1000 genomes]
rs10831173	0.82[AMR][1000 genomes]
rs10831174	0.85[AMR][1000 genomes]
rs10831175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020678	0.82[AMR][1000 genomes]
rs12366039	0.85[AMR][1000 genomes]
rs1257950	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12792677	0.84[AMR][1000 genomes]
rs12808853	0.85[AMR][1000 genomes]
rs1541299	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1541301	0.82[AMR][1000 genomes]
rs1789652	0.81[AMR][1000 genomes]
rs1792632	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1833063	0.85[AMR][1000 genomes]
rs1857680	0.82[AMR][1000 genomes]
rs2000956	0.82[AMR][1000 genomes]
rs3020004	0.81[AMR][1000 genomes]
rs4597032	0.82[AMR][1000 genomes]
rs4753131	0.82[AMR][1000 genomes]
rs4753132	0.82[AMR][1000 genomes]
rs4753548	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753569	0.82[AMR][1000 genomes]
rs480710	0.81[AMR][1000 genomes]
rs519834	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs526036	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs528327	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs532037	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs545450	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs552267	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs556758	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs561807	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs579574	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs581123	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs581771	0.82[AMR][1000 genomes]
rs584109	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs603157	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs613234	0.80[AMR][1000 genomes]
rs656810	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs657242	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs657896	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs669634	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs688910	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs689315	0.80[AMR][1000 genomes]
rs7927338	0.82[AMR][1000 genomes]
rs7927496	0.82[AMR][1000 genomes]
rs7936241	0.82[AMR][1000 genomes]
rs871244	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1038294	chr11:93918837-93982605	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93920400-93937800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:93926800-93938800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:93932000-93936400	Enhancers	HepG2	liver
4	chr11:93934200-93937200	Enhancers	Fetal Lung	lung
5	chr11:93935000-93936200	Weak transcription	Fetal Kidney	kidney

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