Variant report

Variant	rs561807
Chromosome Location	chr11:93976775-93976776
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1014499	0.83[AMR][1000 genomes]
rs10458852	0.80[AMR][1000 genomes]
rs10765657	0.80[AMR][1000 genomes]
rs10765658	0.80[AMR][1000 genomes]
rs10765659	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10765660	0.84[AMR][1000 genomes]
rs10831173	0.80[AMR][1000 genomes]
rs10831174	0.83[AMR][1000 genomes]
rs10831175	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10831184	0.83[AMR][1000 genomes]
rs11020678	0.80[AMR][1000 genomes]
rs11020719	0.81[AMR][1000 genomes]
rs12362988	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12366039	0.83[AMR][1000 genomes]
rs1257950	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12792677	0.84[AMR][1000 genomes]
rs12808853	0.83[AMR][1000 genomes]
rs1541299	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1541301	0.80[AMR][1000 genomes]
rs1789652	0.81[AMR][1000 genomes]
rs1792632	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1833063	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1857680	0.80[AMR][1000 genomes]
rs2000956	0.80[AMR][1000 genomes]
rs4597032	0.80[AMR][1000 genomes]
rs4753131	0.80[AMR][1000 genomes]
rs4753132	0.80[AMR][1000 genomes]
rs4753548	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4753569	0.86[AMR][1000 genomes]
rs480710	0.85[AMR][1000 genomes]
rs519834	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs526036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528327	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs532037	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs545450	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs552267	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs556758	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs579574	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs581123	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs581771	0.86[AMR][1000 genomes]
rs584109	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs603157	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs613234	0.84[AMR][1000 genomes]
rs655358	0.83[AMR][1000 genomes]
rs656810	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs657242	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs657896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs669634	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs672392	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs688910	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs689315	0.84[AMR][1000 genomes]
rs7118270	0.83[AMR][1000 genomes]
rs7927338	0.80[AMR][1000 genomes]
rs7927496	0.80[AMR][1000 genomes]
rs7936241	0.80[AMR][1000 genomes]
rs871244	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038294	chr11:93918837-93982605	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93975600-93976800	Weak transcription	HSMMtube	muscle
2	chr11:93976000-93977000	Weak transcription	Placenta Amnion	Placenta Amnion

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