Variant report

Variant	rs4753548
Chromosome Location	chr11:93932827-93932828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR83-2	chr11:93932662-93932887	XLOC_009524
2	lnc-GPR83-2	chr11:93932661-93932887	NONHSAT023709

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1014499	0.85[AMR][1000 genomes]
rs10458852	0.82[AMR][1000 genomes]
rs10765657	0.82[AMR][1000 genomes]
rs10765658	0.82[AMR][1000 genomes]
rs10765659	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10765660	0.86[AMR][1000 genomes]
rs10831173	0.82[AMR][1000 genomes]
rs10831174	0.85[AMR][1000 genomes]
rs10831175	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831184	0.81[AMR][1000 genomes]
rs11020678	0.82[AMR][1000 genomes]
rs12362988	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366039	0.85[AMR][1000 genomes]
rs1257950	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12792677	0.86[AMR][1000 genomes]
rs12808853	0.85[AMR][1000 genomes]
rs1541299	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1541301	0.82[AMR][1000 genomes]
rs1789652	0.83[AMR][1000 genomes]
rs1792632	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1833063	0.87[AMR][1000 genomes]
rs1857680	0.82[AMR][1000 genomes]
rs2000956	0.82[AMR][1000 genomes]
rs3020004	0.81[AMR][1000 genomes]
rs4597032	0.82[AMR][1000 genomes]
rs4753131	0.82[AMR][1000 genomes]
rs4753132	0.82[AMR][1000 genomes]
rs4753569	0.84[AMR][1000 genomes]
rs480710	0.83[AMR][1000 genomes]
rs519834	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs526036	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs528327	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs532037	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs545450	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs552267	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs556758	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs561807	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs579574	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs581123	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs581771	0.84[AMR][1000 genomes]
rs584109	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs603157	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs613234	0.82[AMR][1000 genomes]
rs655358	0.81[AMR][1000 genomes]
rs656810	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs657242	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs657896	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs669634	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs672392	0.81[AMR][1000 genomes]
rs688910	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs689315	0.82[AMR][1000 genomes]
rs7118270	0.81[AMR][1000 genomes]
rs7927338	0.82[AMR][1000 genomes]
rs7927496	0.82[AMR][1000 genomes]
rs7936241	0.82[AMR][1000 genomes]
rs871244	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1038294	chr11:93918837-93982605	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93917600-93934200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:93920400-93933000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:93920400-93937800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:93926800-93938800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:93928600-93933000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:93928600-93934200	Weak transcription	HSMMtube	muscle
7	chr11:93929400-93934000	Enhancers	NHDF-Ad	bronchial
8	chr11:93929400-93935400	Enhancers	NHLF	lung
9	chr11:93930200-93934000	Weak transcription	Liver	Liver
10	chr11:93930400-93935200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:93931600-93934400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:93931800-93933200	Enhancers	Fetal Lung	lung
13	chr11:93932000-93933600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:93932000-93934000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:93932000-93934200	Enhancers	A549	lung
16	chr11:93932000-93936400	Enhancers	HepG2	liver
17	chr11:93932200-93933200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:93932600-93933000	Enhancers	Brain Angular Gyrus	brain
19	chr11:93932600-93933400	Enhancers	NH-A	brain

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