Variant report

Variant	rs10766361
Chromosome Location	chr11:16978291-16978292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16977971..16978941-chr11:17010604..17011618,29	MCF-7	breast:
2	chr11:16977896..16978786-chr11:17426967..17427655,5	MCF-7	breast:
3	chr11:16975638..16979707-chr11:16982694..16985336,3	MCF-7	breast:
4	chr11:16976889..16978865-chr11:17008807..17011495,3	MCF-7	breast:
5	chr11:16975602..16978503-chr11:16980370..16983065,3	MCF-7	breast:
6	chr11:16978219..16978915-chr11:17003760..17004705,2	MCF-7	breast:
7	chr11:16978198..16978723-chr11:76483683..76484202,2	MCF-7	breast:
8	chr11:16976807..16979737-chr11:16986276..16990868,5	MCF-7	breast:
9	chr11:16977908..16978974-chr11:17010587..17011618,48	MCF-7	breast:
10	chr11:16978219..16978915-chr11:17003760..17004740,5	MCF-7	breast:
11	chr11:16804729..16805340-chr11:16978006..16978887,5	MCF-7	breast:
12	chr11:16966281..16969842-chr11:16976430..16978510,4	MCF-7	breast:
13	chr11:16960396..16961023-chr11:16977926..16978498,2	MCF-7	breast:
14	chr11:16978066..16978747-chr11:17007921..17008692,2	MCF-7	breast:
15	chr11:16977896..16978867-chr11:17426967..17427690,6	MCF-7	breast:
16	chr11:16977925..16978855-chr11:17007771..17009390,6	MCF-7	breast:
17	chr11:16804810..16805340-chr11:16978086..16978887,2	MCF-7	breast:
18	chr11:16977974..16978869-chr11:17010653..17011499,5	MCF-7	breast:
19	chr11:16976871..16981000-chr11:17000472..17004649,3	MCF-7	breast:
20	chr11:16978004..16978751-chr11:20053101..20054014,2	MCF-7	breast:
21	chr11:16817999..16818627-chr11:16977958..16978485,2	MCF-7	breast:
22	chr11:16974672..16978639-chr11:17033931..17036270,6	MCF-7	breast:
23	chr11:16978078..16978699-chr11:17032228..17032731,2	MCF-7	breast:
24	chr11:16977925..16979137-chr11:17007771..17009326,6	MCF-7	breast:
25	chr11:16977354..16980189-chr11:17097593..17100398,3	MCF-7	breast:
26	chr11:16978286..16981863-chr11:16983113..16986432,3	K562	blood:
27	chr11:16971713..16981548-chr11:17031573..17039006,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741714	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741715	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766363	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832702	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832704	0.89[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs10832705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024080	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11024085	0.88[EUR][1000 genomes]
rs11827202	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362815	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs17700056	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs17773381	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860026	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757448	0.89[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs4757455	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104003	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117795	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119088	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865768	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10766361	TEAD1	cis	parietal	SCAN
rs10766361	TSG101	cis	cerebellum	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16964200-16981400	Weak transcription	Gastric	stomach
3	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
4	chr11:16968400-16980000	Weak transcription	Liver	Liver
5	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:16971200-16979400	Enhancers	Stomach Mucosa	stomach
7	chr11:16973600-16982600	Enhancers	Fetal Intestine Large	intestine
8	chr11:16974800-16980600	Weak transcription	Fetal Lung	lung
9	chr11:16975400-16990600	Weak transcription	Spleen	Spleen
10	chr11:16976000-16979200	Enhancers	Placenta	Placenta
11	chr11:16976200-16980800	Weak transcription	Fetal Kidney	kidney
12	chr11:16977400-16978400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:16977400-16978600	Weak transcription	HepG2	liver
14	chr11:16977400-16978800	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:16977600-16978400	Weak transcription	A549	lung
16	chr11:16977600-16979000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:16977600-16979200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:16977600-16979200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:16977800-16978400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr11:16977800-16978600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:16977800-16978600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:16977800-16978600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:16977800-16978600	Enhancers	Pancreas	Pancrea
24	chr11:16977800-16978800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:16977800-16979000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:16977800-16979000	Enhancers	NHEK	skin
27	chr11:16977800-16979200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:16978000-16978400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:16978000-16978600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:16978000-16979000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr11:16978000-16979000	Enhancers	Colonic Mucosa	Colon
32	chr11:16978000-16979200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr11:16978000-16979200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:16978000-16979200	Enhancers	HMEC	breast
35	chr11:16978000-16981400	Enhancers	Fetal Intestine Small	intestine
36	chr11:16978200-16978600	Enhancers	H9 Cell Line	embryonic stem cell
37	chr11:16978200-16978600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr11:16978200-16978600	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr11:16978200-16979000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr11:16978200-16979400	Enhancers	HUES64 Cell Line	embryonic stem cell

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