Variant report

Variant	rs10832704
Chromosome Location	chr11:16967712-16967713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16964676..16968631-chr11:17033514..17037056,6	MCF-7	breast:
2	chr11:16966796..16968842-chr11:17094768..17096924,2	MCF-7	breast:
3	chr11:16966281..16969842-chr11:16976430..16978510,4	MCF-7	breast:
4	chr11:16967480..16968226-chr11:17084925..17085584,5	MCF-7	breast:
5	chr11:16966822..16969208-chr11:17097556..17100182,2	MCF-7	breast:
6	chr11:16967067..16971256-chr11:17030990..17035290,3	MCF-7	breast:
7	chr11:16967271..16967926-chr11:17036420..17037064,2	MCF-7	breast:
8	chr11:16966859..16968159-chr11:17084631..17085602,16	MCF-7	breast:
9	chr11:16967205..16968144-chr11:17084611..17085599,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000221322	Chromatin interaction
ENSG00000110700	Chromatin interaction
ENSG00000272034	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741714	0.86[EUR][1000 genomes]
rs10741715	0.86[EUR][1000 genomes]
rs10766361	0.89[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs10766363	0.85[EUR][1000 genomes]
rs10832702	0.85[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs10832705	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11024080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024085	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827202	0.88[EUR][1000 genomes]
rs12362815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17700056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773381	0.89[CEU][hapmap];0.90[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1860026	0.89[EUR][1000 genomes]
rs4756877	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs4757447	0.89[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs4757448	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757455	0.89[CEU][hapmap];0.90[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs6486327	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7104003	0.89[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs7117795	0.89[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs7119088	0.88[EUR][1000 genomes]
rs7130314	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs72865768	0.87[EUR][1000 genomes]
rs7934117	0.89[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10832704	TEAD1	cis	parietal	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16948400-16967800	Weak transcription	HepG2	liver
2	chr11:16948600-16967800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
4	chr11:16958400-16967800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:16958600-16967800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:16964200-16967800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:16964200-16977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:16964200-16981400	Weak transcription	Gastric	stomach
9	chr11:16964400-16968000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:16964800-16967800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:16965400-16967800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:16965400-16978200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:16967000-16968000	Enhancers	Fetal Heart	heart
14	chr11:16967000-16968400	Enhancers	Liver	Liver
15	chr11:16967000-16968800	Enhancers	Stomach Mucosa	stomach
16	chr11:16967200-16968800	Enhancers	Primary B cells from peripheral blood	blood
17	chr11:16967400-16967800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:16967400-16967800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:16967400-16968000	Enhancers	Pancreas	Pancrea
20	chr11:16967400-16968000	Enhancers	Hela-S3	cervix
21	chr11:16967400-16968200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr11:16967400-16968400	Enhancers	Fetal Intestine Large	intestine
23	chr11:16967400-16968400	Enhancers	A549	lung
24	chr11:16967400-16968600	Genic enhancers	Fetal Intestine Small	intestine
25	chr11:16967400-16968600	Flanking Active TSS	GM12878-XiMat	blood
26	chr11:16967600-16967800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:16967600-16968000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:16967600-16968000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:16967600-16968000	Enhancers	Brain Substantia Nigra	brain
30	chr11:16967600-16968000	Enhancers	Spleen	Spleen
31	chr11:16967600-16968200	Enhancers	Primary B cells from cord blood	blood
32	chr11:16967600-16968200	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:16967600-16968200	Enhancers	Placenta	Placenta
34	chr11:16967600-16968400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:16967600-16968800	Enhancers	H1 Cell Line	embryonic stem cell
36	chr11:16967600-16968800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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