Variant report

Variant	rs11024080
Chromosome Location	chr11:16952037-16952038
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16950118..16952376-chr11:17034228..17037081,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184669	Chromatin interaction
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741714	0.86[EUR][1000 genomes]
rs10741715	0.86[EUR][1000 genomes]
rs10766361	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10766363	0.85[EUR][1000 genomes]
rs10832702	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs10832704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832705	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11024085	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827202	0.88[EUR][1000 genomes]
rs12362815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17700056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773381	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1860026	0.89[EUR][1000 genomes]
rs4756877	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs4757447	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs4757448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757455	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs6486327	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7104003	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs7117795	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs7119088	0.88[EUR][1000 genomes]
rs7130314	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs72865768	0.87[EUR][1000 genomes]
rs7934117	0.85[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16947600-16955400	Weak transcription	Gastric	stomach
2	chr11:16947800-16954200	Weak transcription	Pancreas	Pancrea
3	chr11:16948000-16954200	Weak transcription	Ovary	ovary
4	chr11:16948200-16959600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:16948400-16967800	Weak transcription	HepG2	liver
6	chr11:16948600-16954800	Weak transcription	Left Ventricle	heart
7	chr11:16948600-16954800	Weak transcription	Right Atrium	heart
8	chr11:16948600-16955400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:16948600-16967800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:16949400-16957400	Weak transcription	A549	lung
11	chr11:16949800-16954200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:16949800-16954600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:16950200-16954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:16951200-16952200	Weak transcription	Fetal Heart	heart
15	chr11:16951200-16955000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:16951200-16958000	Weak transcription	Fetal Intestine Large	intestine
17	chr11:16951600-16954600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:16951800-16957000	Strong transcription	Fetal Intestine Small	intestine

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