Variant report

Variant	rs4757447
Chromosome Location	chr11:16955369-16955370
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16949254..16952031-chr11:16954988..16957108,2	MCF-7	breast:
2	chr11:16948844..16950381-chr11:16953392..16956002,2	K562	blood:
3	chr11:16947021..16948883-chr11:16954083..16956444,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10741714	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741715	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766363	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832702	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832704	0.89[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs10832705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024080	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11024085	0.88[EUR][1000 genomes]
rs11827202	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362815	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs17700056	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs17773381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860026	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757448	0.89[CEU][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs4757455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104003	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119088	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121911	0.90[YRI][hapmap]
rs7130314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865768	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4757447	TEAD1	cis	parietal	SCAN
rs4757447	TSG101	cis	cerebellum	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16947600-16955400	Weak transcription	Gastric	stomach
2	chr11:16948200-16959600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:16948400-16967800	Weak transcription	HepG2	liver
4	chr11:16948600-16955400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:16948600-16967800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:16949400-16957400	Weak transcription	A549	lung
7	chr11:16951200-16958000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16951800-16957000	Strong transcription	Fetal Intestine Small	intestine
9	chr11:16953400-16955600	Enhancers	Adipose Nuclei	Adipose
10	chr11:16953800-16956000	Enhancers	Stomach Mucosa	stomach
11	chr11:16954200-16955800	Enhancers	Pancreas	Pancrea
12	chr11:16954200-16956000	Enhancers	Ovary	ovary
13	chr11:16954200-16956200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:16954400-16955800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr11:16954600-16955400	Flanking Active TSS	Fetal Heart	heart
16	chr11:16954600-16955600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:16954600-16967400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:16954800-16955400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:16954800-16955600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:16954800-16955600	Enhancers	Brain Anterior Caudate	brain
21	chr11:16954800-16955600	Enhancers	Right Atrium	heart
22	chr11:16954800-16955800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:16954800-16955800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:16954800-16955800	Enhancers	Esophagus	oesophagus
25	chr11:16954800-16955800	Enhancers	Left Ventricle	heart
26	chr11:16954800-16956000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:16954800-16956000	Enhancers	Aorta	Aorta
28	chr11:16954800-16956200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:16954800-16956200	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:16954800-16964200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:16955000-16955600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr11:16955000-16955800	Enhancers	Right Ventricle	heart
33	chr11:16955000-16956000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:16955000-16956200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr11:16955000-16956600	Enhancers	Liver	Liver
36	chr11:16955200-16955600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr11:16955200-16955800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:16955200-16955800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:16955200-16955800	Enhancers	Osteobl	bone

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