Variant report

Variant	rs10768180
Chromosome Location	chr11:36138760-36138761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36122938..36132060-chr11:36132782..36140537,17	K562	blood:
2	chr11:36125708..36127534-chr11:36137545..36140537,2	K562	blood:

Variant related genes	Relation type
ENSG00000179241	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11033458	1.00[EUR][1000 genomes]
rs11033464	1.00[EUR][1000 genomes]
rs11824729	1.00[EUR][1000 genomes]
rs16928632	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36100600-36139600	Weak transcription	HMEC	breast
2	chr11:36115800-36145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:36119200-36144400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:36120200-36145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:36123400-36144200	Weak transcription	NHEK	skin
6	chr11:36127000-36140600	Weak transcription	Pancreas	Pancrea
7	chr11:36132400-36147400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:36132600-36145000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:36132800-36145000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:36133000-36145000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:36133000-36152200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:36135000-36139400	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:36135000-36139400	Strong transcription	HSMM	muscle
14	chr11:36135200-36138800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:36135200-36144800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:36135800-36139600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:36136000-36147000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:36136000-36147200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:36136000-36152200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:36136200-36144800	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:36136200-36147600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:36136400-36139600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr11:36136600-36140000	Enhancers	HUVEC	blood vessel
24	chr11:36136800-36139200	Weak transcription	A549	lung
25	chr11:36136800-36140400	Weak transcription	Adipose Nuclei	Adipose
26	chr11:36137000-36141600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:36137000-36144000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:36137000-36147200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:36137000-36147200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:36137200-36144200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:36137200-36144400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:36137200-36144400	Weak transcription	Fetal Kidney	kidney
33	chr11:36137200-36144800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:36137400-36141800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:36137400-36142800	Weak transcription	Fetal Stomach	stomach
36	chr11:36137400-36144000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:36137400-36144400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:36137400-36144800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:36137400-36144800	Weak transcription	Fetal Intestine Small	intestine
40	chr11:36137400-36147200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:36137400-36147400	Weak transcription	Gastric	stomach
42	chr11:36137400-36153800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:36137600-36139600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:36137600-36142400	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:36137600-36144200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:36137600-36144800	Weak transcription	HSMMtube	muscle
47	chr11:36137800-36139600	Enhancers	Fetal Brain Male	brain
48	chr11:36137800-36144200	Weak transcription	NHLF	lung
49	chr11:36137800-36144800	Weak transcription	Fetal Lung	lung
50	chr11:36137800-36146600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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