Variant report

Variant	rs16928632
Chromosome Location	chr11:36275434-36275435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10768180	1.00[EUR][1000 genomes]
rs11033458	1.00[EUR][1000 genomes]
rs11033464	1.00[EUR][1000 genomes]
rs11824729	1.00[EUR][1000 genomes]
rs12288057	1.00[EUR][1000 genomes]
rs12292289	1.00[EUR][1000 genomes]
rs16928676	1.00[EUR][1000 genomes]
rs1838870	1.00[EUR][1000 genomes]
rs1838871	1.00[EUR][1000 genomes]
rs4376880	1.00[EUR][1000 genomes]
rs5024748	1.00[EUR][1000 genomes]
rs55667585	1.00[EUR][1000 genomes]
rs55806001	1.00[EUR][1000 genomes]
rs59456163	1.00[EUR][1000 genomes]
rs61679876	1.00[EUR][1000 genomes]
rs73443130	1.00[EUR][1000 genomes]
rs73443131	1.00[EUR][1000 genomes]
rs980048	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36252200-36277800	Weak transcription	Esophagus	oesophagus
2	chr11:36271400-36276000	Weak transcription	NHDF-Ad	bronchial
3	chr11:36271600-36280000	Weak transcription	Fetal Kidney	kidney
4	chr11:36271800-36276000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:36271800-36277800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:36272000-36275600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:36272000-36276200	Weak transcription	Hela-S3	cervix
8	chr11:36272800-36275600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:36272800-36275600	Enhancers	Brain Substantia Nigra	brain
10	chr11:36273000-36275600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:36273000-36275600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:36273000-36276000	Enhancers	Brain Germinal Matrix	brain
13	chr11:36273200-36275800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:36273800-36276600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:36274000-36275800	Enhancers	Fetal Muscle Leg	muscle
16	chr11:36274000-36279200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:36274400-36275600	Enhancers	Fetal Brain Male	brain
18	chr11:36274400-36275800	Enhancers	Fetal Brain Female	brain
19	chr11:36274400-36276800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:36274400-36276800	Enhancers	HSMM	muscle
21	chr11:36274400-36276800	Enhancers	HSMMtube	muscle
22	chr11:36274600-36277000	Enhancers	NHEK	skin
23	chr11:36274800-36276800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:36275000-36276200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:36275000-36276800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:36275000-36277800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:36275200-36276200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:36275200-36277800	Weak transcription	Fetal Lung	lung
29	chr11:36275200-36279000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:36275400-36277800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:36275400-36278400	Weak transcription	Brain Anterior Caudate	brain
32	chr11:36275400-36280000	Weak transcription	Brain Angular Gyrus	brain

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