Variant report

Variant	rs16928676
Chromosome Location	chr11:36331806-36331807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36331050..36333326-chr11:36394222..36396312,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11033458	1.00[EUR][1000 genomes]
rs11033464	1.00[EUR][1000 genomes]
rs11824729	1.00[EUR][1000 genomes]
rs12288057	1.00[EUR][1000 genomes]
rs12292289	1.00[EUR][1000 genomes]
rs16928632	1.00[EUR][1000 genomes]
rs1838870	1.00[EUR][1000 genomes]
rs1838871	1.00[EUR][1000 genomes]
rs4376880	1.00[EUR][1000 genomes]
rs5024748	1.00[EUR][1000 genomes]
rs55667585	1.00[EUR][1000 genomes]
rs55806001	1.00[EUR][1000 genomes]
rs59456163	1.00[EUR][1000 genomes]
rs61679876	1.00[EUR][1000 genomes]
rs73443130	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73443131	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs980048	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3414530	chr11:36330262-36334650	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36323000-36333800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:36323000-36334000	Weak transcription	Ovary	ovary
3	chr11:36323000-36334200	Weak transcription	Brain Anterior Caudate	brain
4	chr11:36323000-36335200	Weak transcription	Colonic Mucosa	Colon
5	chr11:36324000-36333800	Weak transcription	Brain Angular Gyrus	brain
6	chr11:36326400-36333800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:36327200-36335200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:36329000-36335200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:36329600-36332200	Enhancers	Hela-S3	cervix
10	chr11:36330000-36335200	Enhancers	HMEC	breast
11	chr11:36330400-36333800	Weak transcription	Osteobl	bone
12	chr11:36330600-36333200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:36330800-36333200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:36330800-36333600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:36330800-36334400	Weak transcription	Adipose Nuclei	Adipose
16	chr11:36331400-36332000	ZNF genes & repeats	Gastric	stomach
17	chr11:36331400-36333000	Enhancers	Stomach Mucosa	stomach
18	chr11:36331400-36335200	Enhancers	NH-A	brain
19	chr11:36331400-36335400	Enhancers	HSMM	muscle
20	chr11:36331600-36333800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:36331600-36334000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:36331600-36334000	Enhancers	NHEK	skin
23	chr11:36331600-36335000	Weak transcription	Brain Substantia Nigra	brain
24	chr11:36331600-36335200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:36331800-36332000	Enhancers	HSMMtube	muscle
26	chr11:36331800-36332200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:36331800-36332600	Weak transcription	Spleen	Spleen
28	chr11:36331800-36332800	Weak transcription	Lung	lung
29	chr11:36331800-36333800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:36331800-36333800	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:36331800-36334200	Weak transcription	Fetal Lung	lung
32	chr11:36331800-36335200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:36331800-36335400	Weak transcription	Pancreas	Pancrea

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