Variant report

Variant	rs61679876
Chromosome Location	chr11:36339526-36339527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11033458	1.00[EUR][1000 genomes]
rs11033464	1.00[EUR][1000 genomes]
rs11824729	1.00[EUR][1000 genomes]
rs12288057	1.00[EUR][1000 genomes]
rs12292289	1.00[EUR][1000 genomes]
rs16928632	1.00[EUR][1000 genomes]
rs16928676	1.00[EUR][1000 genomes]
rs1838870	1.00[EUR][1000 genomes]
rs1838871	1.00[EUR][1000 genomes]
rs4376880	1.00[EUR][1000 genomes]
rs5024748	1.00[EUR][1000 genomes]
rs55667585	1.00[EUR][1000 genomes]
rs55806001	1.00[EUR][1000 genomes]
rs59456163	1.00[EUR][1000 genomes]
rs73443130	1.00[EUR][1000 genomes]
rs73443131	1.00[EUR][1000 genomes]
rs980048	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36334200-36339800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:36335200-36339600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:36335400-36340200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:36336200-36340000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:36336200-36340200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:36336800-36343400	Weak transcription	Fetal Intestine Small	intestine
7	chr11:36337200-36340000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:36337800-36339800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:36337800-36340200	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:36338000-36340000	Weak transcription	Adipose Nuclei	Adipose
11	chr11:36338400-36339800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:36338400-36339800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:36339000-36340000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:36339000-36340000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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