Variant report

Variant	rs11033458
Chromosome Location	chr11:36163167-36163168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10768180	1.00[EUR][1000 genomes]
rs11033464	1.00[EUR][1000 genomes]
rs11824729	1.00[EUR][1000 genomes]
rs16928632	1.00[EUR][1000 genomes]
rs16928676	1.00[EUR][1000 genomes]
rs59456163	1.00[EUR][1000 genomes]
rs61679876	1.00[EUR][1000 genomes]
rs73443130	1.00[EUR][1000 genomes]
rs73443131	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv897226	chr11:36139934-36169869	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36137800-36171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36145400-36168000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:36145400-36170200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:36148000-36163200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:36148200-36163400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:36150000-36170000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:36152000-36167400	Weak transcription	HSMMtube	muscle
8	chr11:36152600-36169000	Weak transcription	Fetal Intestine Small	intestine
9	chr11:36152800-36163200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:36152800-36167600	Weak transcription	HMEC	breast
11	chr11:36153000-36163400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:36153800-36163200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:36154200-36163200	Weak transcription	Brain Substantia Nigra	brain
14	chr11:36154200-36170600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:36154200-36171000	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:36154400-36167600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:36154400-36170800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:36154600-36171000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:36154800-36169000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:36156000-36164600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:36156200-36163400	Weak transcription	Fetal Brain Female	brain
22	chr11:36156600-36164800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:36156800-36163200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:36156800-36167400	Weak transcription	NHEK	skin
25	chr11:36157000-36163200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:36157000-36167600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:36157000-36171200	Weak transcription	Ovary	ovary
28	chr11:36158000-36163600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:36159600-36163200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:36159800-36163800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:36159800-36164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:36161600-36167600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:36161800-36163600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:36161800-36167600	Weak transcription	A549	lung
35	chr11:36161800-36169800	Weak transcription	HSMM	muscle
36	chr11:36162000-36164800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:36162000-36164800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:36162000-36167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:36162000-36167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:36162600-36164000	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr11:36162600-36164600	Enhancers	Fetal Lung	lung
42	chr11:36162600-36164800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr11:36162600-36164800	Enhancers	Fetal Kidney	kidney
44	chr11:36162600-36165200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr11:36162800-36163200	Enhancers	Fetal Stomach	stomach
46	chr11:36162800-36163600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:36162800-36164400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:36162800-36164600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr11:36162800-36164800	Enhancers	H9 Cell Line	embryonic stem cell
50	chr11:36162800-36165000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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