Variant report

Variant	rs11824729
Chromosome Location	chr11:36171292-36171293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:36160393..36162372-chr11:36170521..36172813,2	K562	blood:
2	chr11:35843384..35844263-chr11:36171219..36172167,4	K562	blood:
3	chr11:36171264..36171928-chr14:66734278..66734780,2	MCF-7	breast:
4	chr11:36044090..36046211-chr11:36170254..36173098,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10768180	1.00[EUR][1000 genomes]
rs11033458	1.00[EUR][1000 genomes]
rs11033464	1.00[EUR][1000 genomes]
rs16928632	1.00[EUR][1000 genomes]
rs16928676	1.00[EUR][1000 genomes]
rs55667585	1.00[EUR][1000 genomes]
rs55806001	1.00[EUR][1000 genomes]
rs59456163	1.00[EUR][1000 genomes]
rs61679876	1.00[EUR][1000 genomes]
rs73443130	1.00[EUR][1000 genomes]
rs73443131	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36163800-36176800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:36164800-36174600	Weak transcription	Fetal Kidney	kidney
3	chr11:36167600-36173600	Enhancers	HMEC	breast
4	chr11:36168000-36174600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:36169000-36175000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:36169000-36178200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:36169200-36174600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:36169400-36173200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:36169800-36173000	Enhancers	HSMM	muscle
10	chr11:36170000-36171400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:36170000-36173000	Enhancers	HSMMtube	muscle
12	chr11:36170000-36175400	Enhancers	NHDF-Ad	bronchial
13	chr11:36170200-36171600	Enhancers	Right Ventricle	heart
14	chr11:36170200-36171600	Enhancers	Spleen	Spleen
15	chr11:36170200-36171800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:36170200-36171800	Enhancers	Left Ventricle	heart
17	chr11:36170200-36172000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr11:36170200-36172000	Enhancers	Lung	lung
19	chr11:36170200-36172600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:36170200-36173000	Enhancers	NHLF	lung
21	chr11:36170200-36173200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:36170200-36173400	Enhancers	HUVEC	blood vessel
23	chr11:36170200-36173600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:36170200-36174400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:36170200-36175600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:36170400-36171600	Genic enhancers	Fetal Muscle Leg	muscle
27	chr11:36170400-36171800	Enhancers	Adipose Nuclei	Adipose
28	chr11:36170400-36172600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:36170400-36172800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
30	chr11:36170400-36177000	Weak transcription	Brain Angular Gyrus	brain
31	chr11:36170600-36172000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr11:36170600-36172000	Enhancers	Fetal Intestine Large	intestine
33	chr11:36170600-36172200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:36170600-36172800	Enhancers	NH-A	brain
35	chr11:36170600-36173600	Enhancers	Psoas Muscle	Psoas
36	chr11:36170600-36175200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:36170800-36171400	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr11:36170800-36171600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:36170800-36172000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr11:36170800-36172000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr11:36170800-36172000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:36170800-36172000	Enhancers	Fetal Intestine Small	intestine
43	chr11:36170800-36172000	Enhancers	Placenta	Placenta
44	chr11:36170800-36172800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:36170800-36172800	Enhancers	Brain Anterior Caudate	brain
46	chr11:36170800-36173000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:36170800-36174600	Enhancers	Osteobl	bone
48	chr11:36171000-36171400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:36171000-36171400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr11:36171000-36171400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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