Variant report

Variant	rs1838871
Chromosome Location	chr11:36360892-36360893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12288057	1.00[EUR][1000 genomes]
rs12292289	1.00[EUR][1000 genomes]
rs16928632	1.00[EUR][1000 genomes]
rs16928676	1.00[EUR][1000 genomes]
rs1838870	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4376880	1.00[EUR][1000 genomes]
rs5024748	1.00[EUR][1000 genomes]
rs55667585	1.00[EUR][1000 genomes]
rs55806001	1.00[EUR][1000 genomes]
rs59456163	1.00[EUR][1000 genomes]
rs61679876	1.00[EUR][1000 genomes]
rs73443130	1.00[EUR][1000 genomes]
rs73443131	1.00[EUR][1000 genomes]
rs980048	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36353400-36361000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:36356200-36361200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:36356600-36361200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:36360800-36364000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links