Variant report

Variant	rs10769947
Chromosome Location	chr11:8758114-8758115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10743093	0.81[CEU][hapmap]
rs10769948	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10769955	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10769957	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10769958	0.96[CEU][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs10769967	0.81[CEU][hapmap]
rs10769970	0.81[CEU][hapmap]
rs10769973	0.81[CEU][hapmap]
rs10840115	0.81[CHD][hapmap]
rs10840134	0.84[CEU][hapmap]
rs10840141	0.81[CEU][hapmap]
rs10840142	0.81[CEU][hapmap]
rs10840148	0.81[CEU][hapmap]
rs11042055	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042059	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042060	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042067	0.80[EUR][1000 genomes]
rs11042069	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11042103	0.81[CEU][hapmap]
rs12224436	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12421789	0.96[CEU][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs1529641	0.82[CEU][hapmap]
rs2316865	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2568043	0.81[CEU][hapmap]
rs2568061	0.81[CEU][hapmap]
rs2568065	0.81[CEU][hapmap]
rs2568090	0.81[CEU][hapmap]
rs3763918	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs3794153	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4579928	0.96[CEU][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs4929911	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4929912	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4929914	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs4929916	0.96[CEU][hapmap];0.81[CHB][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap]
rs6484484	0.96[CEU][hapmap];0.91[CHB][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7107867	0.83[EUR][1000 genomes]
rs7123429	0.81[CEU][hapmap]
rs7129667	0.83[EUR][1000 genomes]
rs7937298	0.81[CEU][hapmap]
rs7944560	0.96[CEU][hapmap];0.91[CHB][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7945705	0.81[CEU][hapmap]
rs905290	0.96[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs10769947	OR51B6	cis	parietal	SCAN
rs10769947	OR51A7	cis	cerebellum	SCAN
rs10769947	OR52A1	cis	parietal	SCAN
rs10769947	SNORA45	cis	parietal	SCAN
rs10769947	RRP8	cis	parietal	SCAN
rs10769947	TRIM66	cis	lung	GTEx
rs10769947	C11orf17	cis	multi-tissue	Pritchard
rs10769947	OR52E8	cis	cerebellum	SCAN

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8750800-8760200	Weak transcription	Fetal Brain Male	brain
4	chr11:8752600-8769800	Weak transcription	Colonic Mucosa	Colon
5	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:8752800-8758600	Enhancers	Left Ventricle	heart
7	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:8753200-8759600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:8754600-8771000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:8754800-8760600	Strong transcription	Fetal Stomach	stomach
12	chr11:8754800-8762400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:8755200-8760400	Weak transcription	Aorta	Aorta
14	chr11:8755200-8762200	Weak transcription	Brain Anterior Caudate	brain
15	chr11:8755200-8762400	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:8755200-8767000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:8755200-8771600	Weak transcription	Hela-S3	cervix
18	chr11:8755200-8774200	Weak transcription	Brain Angular Gyrus	brain
19	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:8755400-8759600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:8755400-8763800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:8755400-8770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:8755600-8758200	Weak transcription	HSMMtube	muscle
24	chr11:8755600-8758400	Weak transcription	Fetal Lung	lung
25	chr11:8755600-8760400	Weak transcription	Pancreas	Pancrea
26	chr11:8755600-8763000	Strong transcription	Fetal Muscle Leg	muscle
27	chr11:8755600-8768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:8755600-8777200	Weak transcription	Psoas Muscle	Psoas
29	chr11:8755800-8759400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:8755800-8760200	Weak transcription	A549	lung
31	chr11:8755800-8760800	Weak transcription	Brain Substantia Nigra	brain
32	chr11:8755800-8761200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:8755800-8762400	Weak transcription	HSMM	muscle
34	chr11:8755800-8764000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:8755800-8767000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:8755800-8770200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:8756000-8758800	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:8756000-8759400	Weak transcription	NHEK	skin
40	chr11:8756000-8759600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:8756000-8761200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:8756000-8761800	Weak transcription	NHDF-Ad	bronchial
43	chr11:8756000-8765200	Weak transcription	HMEC	breast
44	chr11:8756000-8768400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:8756000-8768400	Weak transcription	Stomach Mucosa	stomach
46	chr11:8756000-8776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:8756200-8767800	Weak transcription	Small Intestine	intestine
48	chr11:8756600-8759200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:8756600-8761200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:8756800-8758600	Strong transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links