Variant report

Variant	rs10769948
Chromosome Location	chr11:8761782-8761783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8761021..8763259-chr11:8788276..8790908,2	K562	blood:
2	chr11:8720712..8722850-chr11:8760590..8762242,2	K562	blood:
3	chr11:8748705..8750349-chr11:8760706..8762293,2	K562	blood:
4	chr11:8760787..8762723-chr11:8791279..8794203,2	MCF-7	breast:
5	chr11:8707490..8709770-chr11:8761383..8763513,3	K562	blood:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction
ENSG00000255159	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10743093	0.81[CEU][hapmap]
rs10769947	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10769955	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769957	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769958	0.96[CEU][hapmap];0.82[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10769967	0.81[CEU][hapmap]
rs10769970	0.81[CEU][hapmap]
rs10769973	0.81[CEU][hapmap]
rs10840130	0.80[AMR][1000 genomes]
rs10840134	0.84[CEU][hapmap]
rs10840141	0.81[CEU][hapmap]
rs10840142	0.81[CEU][hapmap]
rs10840148	0.81[CEU][hapmap]
rs11042055	0.96[CEU][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11042059	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042060	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042067	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11042069	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11042103	0.81[CEU][hapmap]
rs12224436	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12421789	0.96[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs1529641	0.82[CEU][hapmap]
rs2316865	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2568043	0.81[CEU][hapmap]
rs2568061	0.81[CEU][hapmap]
rs2568065	0.81[CEU][hapmap]
rs2568090	0.81[CEU][hapmap]
rs3763918	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3794153	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4579928	0.96[CEU][hapmap];0.82[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4929911	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4929912	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4929914	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4929916	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs6484484	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7107867	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7123429	0.81[CEU][hapmap]
rs7129667	0.84[EUR][1000 genomes]
rs7937298	0.81[CEU][hapmap]
rs7944560	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7945705	0.81[CEU][hapmap]
rs905290	0.96[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.92[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10769948	TMEM9B-AS1	cis	Muscle Skeletal	GTEx
rs10769948	TMEM9B-AS1	cis	lung	GTEx

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8752600-8769800	Weak transcription	Colonic Mucosa	Colon
4	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:8754600-8771000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:8754800-8762400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:8755200-8762200	Weak transcription	Brain Anterior Caudate	brain
10	chr11:8755200-8762400	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:8755200-8767000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:8755200-8771600	Weak transcription	Hela-S3	cervix
13	chr11:8755200-8774200	Weak transcription	Brain Angular Gyrus	brain
14	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:8755400-8763800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:8755400-8770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:8755600-8763000	Strong transcription	Fetal Muscle Leg	muscle
18	chr11:8755600-8768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:8755600-8777200	Weak transcription	Psoas Muscle	Psoas
20	chr11:8755800-8762400	Weak transcription	HSMM	muscle
21	chr11:8755800-8764000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:8755800-8767000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:8755800-8770200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:8756000-8761800	Weak transcription	NHDF-Ad	bronchial
26	chr11:8756000-8765200	Weak transcription	HMEC	breast
27	chr11:8756000-8768400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:8756000-8768400	Weak transcription	Stomach Mucosa	stomach
29	chr11:8756000-8776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:8756200-8767800	Weak transcription	Small Intestine	intestine
31	chr11:8757200-8761800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:8757400-8766800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:8757400-8767200	Weak transcription	Fetal Intestine Large	intestine
34	chr11:8757400-8777400	Weak transcription	Adipose Nuclei	Adipose
35	chr11:8757600-8767000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:8757800-8777800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:8758000-8764000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:8758400-8767200	Weak transcription	NH-A	brain
39	chr11:8758400-8768200	Weak transcription	HepG2	liver
40	chr11:8758400-8770600	Weak transcription	Lung	lung
41	chr11:8758600-8766400	Weak transcription	Left Ventricle	heart
42	chr11:8758600-8767000	Weak transcription	HSMMtube	muscle
43	chr11:8758600-8770800	Weak transcription	Esophagus	oesophagus
44	chr11:8759200-8763800	Strong transcription	Fetal Intestine Small	intestine
45	chr11:8759200-8764200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr11:8759400-8763200	Strong transcription	NHEK	skin
47	chr11:8759400-8764400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:8759600-8763600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:8759600-8764200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:8759800-8762000	Weak transcription	Gastric	stomach

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