Variant report

Variant	rs10769955
Chromosome Location	chr11:8784647-8784648
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8783803..8785977-chr11:8786561..8788649,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10769947	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10769948	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769957	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769958	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10840114	1.00[YRI][hapmap]
rs10840130	1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs10840147	0.81[CEU][hapmap]
rs11042055	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042059	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042060	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042067	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11042069	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042078	0.80[AMR][1000 genomes]
rs11042079	0.84[AMR][1000 genomes]
rs11042082	0.83[AMR][1000 genomes]
rs11042088	0.82[AMR][1000 genomes]
rs12224436	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12421789	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12794444	0.82[AMR][1000 genomes]
rs2316865	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3763918	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3794153	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4554887	0.83[AMR][1000 genomes]
rs4579928	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4910062	1.00[YRI][hapmap]
rs4929911	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4929912	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4929914	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4929916	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61876187	0.84[AMR][1000 genomes]
rs6484484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484496	0.85[EUR][1000 genomes]
rs7107867	0.90[EUR][1000 genomes]
rs7129667	0.90[EUR][1000 genomes]
rs7940366	1.00[YRI][hapmap]
rs7944560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs905290	0.92[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10769955	TMEM9B-AS1	cis	lung	GTEx
rs10769955	AKIP1	cis	Thyroid	GTEx
rs10769955	TMEM9B-AS1	cis	Muscle Skeletal	GTEx

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8772400-8787000	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:8772400-8788400	Weak transcription	Hela-S3	cervix
3	chr11:8777400-8795800	Enhancers	Rectal Smooth Muscle	rectum
4	chr11:8777600-8787800	Weak transcription	Esophagus	oesophagus
5	chr11:8777800-8785400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr11:8779200-8785000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:8779200-8785000	Weak transcription	HSMMtube	muscle
8	chr11:8779200-8786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:8779400-8786600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:8779400-8787000	Weak transcription	NHEK	skin
11	chr11:8779600-8786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:8779600-8799600	Weak transcription	Fetal Brain Male	brain
13	chr11:8779800-8784800	Weak transcription	HSMM	muscle
14	chr11:8780000-8786600	Weak transcription	HMEC	breast
15	chr11:8780000-8792400	Weak transcription	HepG2	liver
16	chr11:8781000-8786800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:8781400-8786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:8781400-8787800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:8781400-8794600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:8781600-8785800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:8781600-8786600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:8781800-8786600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:8781800-8786600	Weak transcription	NHDF-Ad	bronchial
24	chr11:8782000-8787200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:8782000-8791600	Enhancers	Colon Smooth Muscle	Colon
26	chr11:8782200-8786800	Weak transcription	Aorta	Aorta
27	chr11:8782400-8785800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:8783000-8785000	Enhancers	Stomach Smooth Muscle	stomach
29	chr11:8783000-8785200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr11:8783000-8786600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:8783200-8786600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:8783200-8786600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:8783200-8786600	Weak transcription	NH-A	brain
34	chr11:8783200-8790000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:8783400-8786600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:8783400-8786600	Weak transcription	NHLF	lung
37	chr11:8783400-8786800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:8783600-8785200	Weak transcription	Fetal Heart	heart
39	chr11:8783600-8787000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:8783800-8785800	Weak transcription	Placenta	Placenta
41	chr11:8783800-8787800	Weak transcription	Liver	Liver
42	chr11:8783800-8788000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:8783800-8788000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:8783800-8788200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:8783800-8788400	Weak transcription	Fetal Lung	lung
46	chr11:8783800-8788800	Weak transcription	Fetal Kidney	kidney
47	chr11:8784000-8785000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:8784000-8785400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:8784000-8786000	Weak transcription	Pancreas	Pancrea
50	chr11:8784000-8786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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