Variant report

Variant	rs11042055
Chromosome Location	chr11:8756856-8756857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8755358..8756996-chr11:8767544..8769527,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10769947	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769948	0.96[CEU][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10769955	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10769957	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10769958	0.92[CEU][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs10840134	0.80[CEU][hapmap]
rs11042059	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11042060	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042069	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12224436	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12421789	0.92[CEU][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs2316865	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3763918	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3794153	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4579928	0.92[CEU][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs4929911	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4929912	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4929914	0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4929916	0.92[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs6484484	0.92[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes]
rs7107867	0.83[EUR][1000 genomes]
rs7129667	0.83[EUR][1000 genomes]
rs7944560	0.92[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes]
rs905290	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs11042055	TMEM9B-AS1	cis	lung	GTEx
rs11042055	OR52E8	cis	cerebellum	SCAN
rs11042055	OR51B6	cis	parietal	SCAN
rs11042055	OR51A7	cis	cerebellum	SCAN
rs11042055	TMEM9B	cis	parietal	SCAN
rs11042055	OR52A1	cis	parietal	SCAN
rs11042055	RRP8	cis	parietal	SCAN
rs11042055	ST5	cis	parietal	SCAN

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:8744200-8757600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:8746200-8757400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:8746400-8757200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:8746600-8757200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:8750800-8760200	Weak transcription	Fetal Brain Male	brain
8	chr11:8752600-8769800	Weak transcription	Colonic Mucosa	Colon
9	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:8752800-8758600	Enhancers	Left Ventricle	heart
11	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:8753200-8759600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:8753600-8757400	Enhancers	Fetal Intestine Large	intestine
14	chr11:8753800-8757000	Genic enhancers	Fetal Intestine Small	intestine
15	chr11:8754200-8757600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:8754600-8757200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:8754600-8771000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:8754800-8757000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:8754800-8760600	Strong transcription	Fetal Stomach	stomach
21	chr11:8754800-8762400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:8755200-8760400	Weak transcription	Aorta	Aorta
23	chr11:8755200-8762200	Weak transcription	Brain Anterior Caudate	brain
24	chr11:8755200-8762400	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:8755200-8767000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:8755200-8771600	Weak transcription	Hela-S3	cervix
27	chr11:8755200-8774200	Weak transcription	Brain Angular Gyrus	brain
28	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:8755400-8759600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:8755400-8763800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:8755400-8770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:8755600-8757000	Weak transcription	Esophagus	oesophagus
33	chr11:8755600-8757000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr11:8755600-8757000	Weak transcription	Lung	lung
35	chr11:8755600-8757200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:8755600-8758200	Weak transcription	HSMMtube	muscle
37	chr11:8755600-8758400	Weak transcription	Fetal Lung	lung
38	chr11:8755600-8760400	Weak transcription	Pancreas	Pancrea
39	chr11:8755600-8763000	Strong transcription	Fetal Muscle Leg	muscle
40	chr11:8755600-8768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:8755600-8777200	Weak transcription	Psoas Muscle	Psoas
42	chr11:8755800-8757000	Weak transcription	Right Ventricle	heart
43	chr11:8755800-8757000	Weak transcription	NHLF	lung
44	chr11:8755800-8758000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:8755800-8758000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:8755800-8759400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:8755800-8760200	Weak transcription	A549	lung
48	chr11:8755800-8760800	Weak transcription	Brain Substantia Nigra	brain
49	chr11:8755800-8761200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:8755800-8762400	Weak transcription	HSMM	muscle

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