Variant report

Variant	rs10772330
Chromosome Location	chr12:7592035-7592036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10444429	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10459096	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10772247	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10772331	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10772338	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10845124	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10845159	0.88[ASN][1000 genomes]
rs10845176	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10845177	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10845178	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11053688	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11053769	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11053788	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12321231	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4072798	0.80[ASN][1000 genomes]
rs58195891	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7133310	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350216	chr12:7432676-7604018	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv976561	chr12:7590619-7592246	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7582600-7592200	Weak transcription	Adipose Nuclei	Adipose
2	chr12:7586600-7592400	Weak transcription	HMEC	breast
3	chr12:7587400-7592200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:7589000-7592200	Weak transcription	HUVEC	blood vessel
5	chr12:7590000-7593400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr12:7590200-7593200	Active TSS	K562	blood
7	chr12:7591000-7593600	Active TSS	A549	lung
8	chr12:7591200-7593200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr12:7591200-7593400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr12:7591400-7592200	Weak transcription	NHEK	skin
11	chr12:7591400-7592400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:7591600-7592200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:7591600-7592800	Active TSS	Placenta	Placenta
14	chr12:7591800-7592200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:7591800-7593000	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr12:7592000-7593400	Active TSS	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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